Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A15
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20200.1 68417.m02953 terpene synthase/cyclase family protein...    31   0.68 
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ...    28   4.8  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    28   4.8  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    27   8.3  

>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
           5-epi-aristolochene synthase, Nicotiana tabacum,
           PATX:G505588
          Length = 604

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 164 SYTIASSVSDYKAAVKTTFQLEKECRSDVISSVVHKLLLEGQPNVGEYA 310
           SY++ +++ ++KAA K    LEK  ++D I S   + +  G+  V  YA
Sbjct: 415 SYSVNATIEEFKAAAKANIDLEKWAQADHIPS-FEEYMEVGEVEVTVYA 462


>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
            polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
            (RP140) identical to SP|P38420 DNA-directed RNA
            polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase II subunit 2) {Arabidopsis thaliana}
          Length = 1188

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 303  NTLTVSGYRSGEDIVEVYFPIEFRLLFNE 389
            N+    G ++  DIV+VY P   +LLF E
Sbjct: 1138 NSFECRGCKNKTDIVQVYIPYACKLLFQE 1166


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 173 LYNCITGSALLNGGESLEVIETAVLLHRGV 84
           +Y  +T   ++NG E L ++ET V+ H  +
Sbjct: 142 IYEPMTNKGVMNGIEKLPLLETLVIFHSSI 171


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 399 TLDVR*TTVETLSESKLRLCPHRICNQRL*AYSPTFGCP 283
           T D+      + S SK+ LC H++C+      SP   CP
Sbjct: 146 TKDLNEYNPSSSSTSKVFLCSHKLCDSASDCESPKEQCP 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,536,966
Number of Sequences: 28952
Number of extensions: 184409
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)