Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A14
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.4  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 202 PSNSQAAAKVPPPKPGSWGPMTSHSINVPS 291
           P+++     +PPP P S  P+ S +  +PS
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 547 QDTKKIRVIKPVERLDEEQEIHPEVGVEDQVVKLEQDSKMALRQLI 684
           QD    R + P  +L+EE+ +H     E++++K+E + K    Q +
Sbjct: 372 QDHSVFREVNPSAKLEEERALH-----EEKLMKMEAEMKTIFSQKV 412


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 77  HRSWLTYLRTIIVW*Y 124
           HR W  Y+ T+I+W Y
Sbjct: 687 HRPWCLYVSTLILWAY 702


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 4   QGTTTKRVVITTNPQQNIILKSALPSKLAHISKDNNSLVVQGQQHTQLHQVNVPGKGIQF 183
           QG T   +V T        + S   SKL  IS DNN+      +++   Q   P   I+ 
Sbjct: 235 QGVTQPSLVNTEQLSHQQSISSTKSSKLDEISADNNAQSAVDNKYSSPPQTIDPQANIKA 294

Query: 184 IRLVSNPSN 210
           +    + SN
Sbjct: 295 LITPEDRSN 303


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 100 KDNNSLVVQGQQHTQLHQ----VNVPGKGIQFIRLVSNPSNSQAAAKVPPPKPGS 252
           KD    V+     TQ+ +     + P  G    +L+++PS++   + V P KP S
Sbjct: 644 KDTKGYVISNDDSTQVEEDSEDKSTPNTGAS-AKLINDPSSTITVSDVYPKKPAS 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,948
Number of Sequences: 5004
Number of extensions: 46972
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)