Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A14
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0698 - 31311529-31312055,31312160-31312346 32 0.49
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 30 1.5
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 29 4.6
10_06_0155 + 11306808-11306956,11307157-11307418,11307496-113076... 29 4.6
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 29 4.6
08_02_1408 + 26860640-26860701,26860811-26860919,26861566-268617... 28 6.0
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 28 6.0
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 28 8.0
07_03_1257 - 25241194-25242018 28 8.0
05_05_0111 + 22479971-22480093,22480238-22480471 28 8.0
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 8.0
>01_06_0698 - 31311529-31312055,31312160-31312346
Length = 237
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 217 AAAKVPPPKPGSWGPMTSHSINVPSKNFVLTDSKGNIIQMGSEKMASGQPPP 372
A A PPP P SWG H+ P K+ + G + S + G PPP
Sbjct: 166 AGATTPPPLPPSWGSAPEHA-QAPGKSSLGGSGGGEM----SRSSSLGAPPP 212
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 466 TQTVRSTQSLLAPLASITN-TRVTIDDVQDTKKIRVIKPVERLDEEQEIHPEVGVEDQV 639
T T + ++ P+ T T++ DD++ K I V EE + P+VGV+ QV
Sbjct: 435 TDTSTTCNQMVEPVRFQTEETQIGTDDLRGQKNIEQHYAVHESREENMLPPKVGVQQQV 493
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 679 AALEPSSSPALT*PPGLPHRPRDVSPVPRQDVQR 578
A PSS+PA PP LP PR + P P Q + R
Sbjct: 7 ARFSPSSNPARPPPPRLP-LPRFLPPTPPQALLR 39
>10_06_0155 +
11306808-11306956,11307157-11307418,11307496-11307697,
11308118-11308353
Length = 282
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -2
Query: 679 AALEPSSSPALT*PPGLPHRPRDVSPVP 596
A +PSS L PPG P PRDVS P
Sbjct: 16 ALFDPSSDSPLPSPPGSP--PRDVSTTP 41
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 538 DDVQDTKKIRVIKPVERLDEEQEIHPEVGVEDQVVKLEQDSKMALRQLI 684
D D I+P +++ +GVE +V KLE+D K+ L++ +
Sbjct: 712 DPAMDYDSQMQIQPAIMVEDANADDVSLGVEGEVKKLEKDKKLRLQECL 760
>08_02_1408 +
26860640-26860701,26860811-26860919,26861566-26861739,
26861843-26861923,26862333-26862536,26862626-26862811
Length = 271
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 550 DTKK-IRVIKPVERLDEEQEIHPEVGVEDQVVKLEQDS 660
DT K + +K + R EE E PE+ D+++K+E+D+
Sbjct: 187 DTMKLVTALKKITRPGEEIEHPPEMFSSDELLKIEKDA 224
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 136 HTQLHQVNVPGKGIQFIRLVSNPSNSQAAAKVPPPKPG---SWGPMTSHSINVPSKNFVL 306
H L ++ +G R +P AAA PPP P +W P + +VPS FV
Sbjct: 53 HPHLSKILPFRRGRPLARSYDSPPPPAAAAAAPPPPPAWRLAWLP-PARVPDVPSDAFVF 111
Query: 307 TDSKG 321
+ G
Sbjct: 112 LGAHG 116
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 19 KRVVITTNPQQNIILKSALPSKLAHISKDNNSL 117
KR+ T P+ +++ S +PS L HI NS+
Sbjct: 69 KRLPEMTIPENSVVAASIVPSHLQHIDTRRNSI 101
>07_03_1257 - 25241194-25242018
Length = 274
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 679 AALEPSSSPALT*PPGLPHRPRDVSPVPR 593
AA P++SP+ + PP L RPR P+P+
Sbjct: 14 AAECPATSPSPSSPPPLQPRPRSPRPMPQ 42
>05_05_0111 + 22479971-22480093,22480238-22480471
Length = 118
Score = 27.9 bits (59), Expect = 8.0
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +1
Query: 574 KPVERLDEEQEIHPEVGVEDQVVKL 648
KP E+ E+++HP++G+ + + +
Sbjct: 31 KPAEKKPAEEKVHPDIGISSKAMSI 55
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 493 LLAPLASITNTR--VTIDDVQDTKKIRVIKPVERLDEEQEIH 612
+LAP T R T+DD TK + +P LD++QEI+
Sbjct: 1632 VLAPSGDATQVRSKATLDDNVSTKPEKPRQPKADLDDDQEIN 1673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.127 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,206
Number of Sequences: 37544
Number of extensions: 336256
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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