Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A14
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.33
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p... 30 1.8
Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein. 29 2.4
AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein. 29 2.4
U80451-6|AAY55867.1| 200|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 28 7.2
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 28 7.2
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 28 7.2
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 28 7.2
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 535 IDDVQDTKKIRVIKPVERLDEEQEIHPEVGVEDQVVKLEQDSKMALRQLI 684
ID+ Q T +IR +P +D+E E E + +Q +++EQ ++ +L+
Sbjct: 1072 IDEAQPTDEIRRAQPTNEMDKEMEF--EKRIREQRIQMEQAKRLREEELL 1119
>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 565 RVIKPVERLDEEQEIHPEVGVEDQVVKLEQDSKM 666
RVIK + LD+E E E+G+ +++V ++D ++
Sbjct: 334 RVIKQFQELDDEVERRKEMGLAEEIVDDDEDDEI 367
>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 565 RVIKPVERLDEEQEIHPEVGVEDQVVKLEQDSKM 666
RVIK + LD+E E E+G+ +++V ++D ++
Sbjct: 334 RVIKQFQELDDEVERRKEMGLAEEIVDDDEDDEI 367
>Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 193 VSNPSNSQAAAKVPPPKPGSWGPMTSHSINVPSKNFVLTDSKGN 324
+S PS S AA P P M H + SK+ + T ++GN
Sbjct: 317 ISAPSTSAKAATKEKPVPKPRSEMVFHDVPSTSKDDIATGTRGN 360
>Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 193 VSNPSNSQAAAKVPPPKPGSWGPMTSHSINVPSKNFVLTDSKGN 324
+S PS S AA P P M H + SK+ + T ++GN
Sbjct: 317 ISAPSTSAKAATKEKPVPKPRSEMVFHDVPSTSKDDIATGTRGN 360
>AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein.
Length = 972
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 193 VSNPSNSQAAAKVPPPKPGSWGPMTSHSINVPSKNFVLTDSKGN 324
+S PS S AA P P M H + SK+ + T ++GN
Sbjct: 317 ISAPSTSAKAATKEKPVPKPRSEMVFHDVPSTSKDDIATGTRGN 360
>AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein.
Length = 972
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 193 VSNPSNSQAAAKVPPPKPGSWGPMTSHSINVPSKNFVLTDSKGN 324
+S PS S AA P P M H + SK+ + T ++GN
Sbjct: 317 ISAPSTSAKAATKEKPVPKPRSEMVFHDVPSTSKDDIATGTRGN 360
>U80451-6|AAY55867.1| 200|Caenorhabditis elegans Hypothetical
protein F11G11.14 protein.
Length = 200
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 412 ERKFVRIAPVTSKSGQAETQTVRSTQSLLAPLASITNTRVTIDDVQDTKKIRVIKPVERL 591
ERK V +AP S+S +T ++ +S +IT T++ + + + PV L
Sbjct: 39 ERKPVPVAPEASQSTSECAKTQKTDKSEANVKFNITTTQID-KKADEFEGDDEVNPVALL 97
Query: 592 DEEQ-EIHPEVGVEDQVVKLEQDSKMA 669
+Q ++ P+ E V E+++K A
Sbjct: 98 PVKQHKLKPQAAAEKDVKPAEKNAKAA 124
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 27.9 bits (59), Expect = 7.2
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 QFIRLVSNPSNSQAAA-KVPPPKPGSWGPMTSHSINV--PSKNFVLTDSKGNIIQMGSEK 348
QFIR + Q VPPP WG + +NV K+ L+ + N GS K
Sbjct: 369 QFIRYIFFVLLPQVLLLNVPPPLQTLWGELDDDPLNVRRRKKSHYLSRNVNN----GSTK 424
Query: 349 MASGQPPPLVIXXXXXXXXXXERKFVRIAPVTSKSGQAETQTVRSTQSLLAP 504
MAS P + +R+ ++ VTS + T RS LAP
Sbjct: 425 MAS--PMSTLRVPQSAGSVSEKRQSFQMIDVTSPN---SPNTARSRAPSLAP 471
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Frame = +1
Query: 130 QQHTQL--HQVNVPGKGIQFIRLVSN-----PSNSQAAAKVPPPKP 246
QQHTQ H VP + +++V P+ +Q+++ +PPP P
Sbjct: 562 QQHTQQQQHHQTVPTQSSSIVQVVQPIPPPPPTLAQSSSNIPPPPP 607
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 27.9 bits (59), Expect = 7.2
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 QFIRLVSNPSNSQAAA-KVPPPKPGSWGPMTSHSINV--PSKNFVLTDSKGNIIQMGSEK 348
QFIR + Q VPPP WG + +NV K+ L+ + N GS K
Sbjct: 369 QFIRYIFFVLLPQVLLLNVPPPLQTLWGELDDDPLNVRRRKKSHYLSRNVNN----GSTK 424
Query: 349 MASGQPPPLVIXXXXXXXXXXERKFVRIAPVTSKSGQAETQTVRSTQSLLAP 504
MAS P + +R+ ++ VTS + T RS LAP
Sbjct: 425 MAS--PMSTLRVPQSAGSVSEKRQSFQMIDVTSPN---SPNTARSRAPSLAP 471
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 27.9 bits (59), Expect = 7.2
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 QFIRLVSNPSNSQAAA-KVPPPKPGSWGPMTSHSINV--PSKNFVLTDSKGNIIQMGSEK 348
QFIR + Q VPPP WG + +NV K+ L+ + N GS K
Sbjct: 369 QFIRYIFFVLLPQVLLLNVPPPLQTLWGELDDDPLNVRRRKKSHYLSRNVNN----GSTK 424
Query: 349 MASGQPPPLVIXXXXXXXXXXERKFVRIAPVTSKSGQAETQTVRSTQSLLAP 504
MAS P + +R+ ++ VTS + T RS LAP
Sbjct: 425 MAS--PMSTLRVPQSAGSVSEKRQSFQMIDVTSPN---SPNTARSRAPSLAP 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.127 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,887
Number of Sequences: 27780
Number of extensions: 278260
Number of successful extensions: 800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -