Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A14
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.17 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.51 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 184 IRLVSNPSNSQAAAKVPPPKPGSWGPMTSHSINVPSKNFVLTDSKGNIIQMGSEKMASGQ 363
           + +V   S++      PPP P S GP    S  +     + T     ++   S+K  +G 
Sbjct: 328 VNIVLGDSDTPPKPAPPPPPPSSSGP---DSAKLDKIFDIATKENAMLLSGRSQKSTTGP 384

Query: 364 PP 369
           PP
Sbjct: 385 PP 386


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 85   LAHISKDNNSLVVQGQQHTQLHQVNV-PGKGIQFIRL 192
            +A +     SL+   QQH   HQ+ V    G+Q IRL
Sbjct: 900  VAVVKSSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRL 936


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 122 YKVNNIHSYIKSMFLEKVFNL*GWYRTHL 208
           YKV N+ +YI    +    N   W  THL
Sbjct: 791 YKVGNVQAYIDGNVVFVCHNGMNWMPTHL 819


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 287 GTLIECDVIGPHDPGFGGGT 228
           GT+ +CD   PHD    GG+
Sbjct: 249 GTIRKCDESSPHDQVIIGGS 268


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 188 GWYRTHLIRKQRRRFH 235
           GW R +++ KQ   FH
Sbjct: 182 GWMRRNVLNKQHVHFH 197


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 480 TNRLRFSLSGFTRNRSYSNE 421
           T+R R+S S     RSY NE
Sbjct: 267 TSRKRYSRSREREQRSYKNE 286


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 91  HISKDNNSLVVQGQQHTQLHQVNVPGKGIQFIRLVSNPSNSQAAAK-VPPPKPGSW 255
           HIS+    L+    +  +  ++ V GKGI     +    +  ++ K +   +P  W
Sbjct: 561 HISQSTKELLSPSYRVKERGEIEVKGKGIMKTYWLEKREHRSSSTKGITIQEPPQW 616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,095
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)