Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A13
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 34 0.095
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 2.0
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706... 28 4.7
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 28 6.2
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 27 8.2
03_02_1034 + 13555569-13556084,13556096-13556527 27 8.2
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630... 27 8.2
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 27 8.2
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 33.9 bits (74), Expect = 0.095
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 468 MTMFRKMLSYNQYNMDKYTYVPLLSICTLLA 560
++++R MLS+++ + + YTY PLL+ C LA
Sbjct: 73 ISLYRSMLSHSRSHPNNYTYPPLLAACARLA 103
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 285 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 461
KL +LL + +QM++EG LT D + + KK D M + IL MN + +M
Sbjct: 515 KLLVLLQNGKQMVQEGALTALASVADSSQEHFKKYYDAVMPYLKAIL--MNATDKSNRML 572
Query: 462 HMMTM 476
+M
Sbjct: 573 RAKSM 577
>10_03_0014 -
7060587-7060730,7060813-7060981,7061444-7061613,
7061701-7061879,7061978-7062043,7062394-7062567,
7062669-7062967,7063243-7063343,7063600-7063684,
7063797-7063947,7064267-7064451,7065599-7065786
Length = 636
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 529 FPCSRYVHYLLTRSSI 576
FPC+RY HY+ + +SI
Sbjct: 262 FPCNRYTHYMTSSTSI 277
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 529 FPCSRYVHYLLTRSSI 576
FPC+RY HY+ + +S+
Sbjct: 289 FPCNRYTHYMTSSTSV 304
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 27.5 bits (58), Expect = 8.2
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +3
Query: 18 YLHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 197
++ N P W YG+ +R E L+ + + + E L +++ F E VK
Sbjct: 344 FMVWNSPQW----AYGVRHQRGLESLLRQHPEACVVMLSETL-----ELEFFQ--EFVKE 392
Query: 198 GYWPKIRLPNGDEM--PVRQNNFVPVTSENLKLKMLLDDVEQMIR 326
GY + LPN DE+ ++FV V +E K K +++R
Sbjct: 393 GYKVAVALPNLDELLEGTLTHDFVSVWNEWRKTKYYPLHYSELVR 437
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 333 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 452
+L+G R DG ++ + P D+ L R+ L G NV D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260
>01_07_0310 +
42660671-42660795,42660996-42661026,42662958-42663079,
42663428-42663544,42663881-42663950
Length = 154
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 192 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 329
K +W ++ D P N +PV + N K K QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 159 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 296
D K F+ W E N WP + +P G ++Q F +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,905
Number of Sequences: 37544
Number of extensions: 289354
Number of successful extensions: 669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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