Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A13
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    25   0.77 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    25   0.77 
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   4.2  
Z69716-4|CAA93528.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 25.0 bits (52), Expect(2) = 0.77
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 154 CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 240
           CAT++CS G      ++    A CP    C
Sbjct: 381 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 410



 Score = 24.2 bits (50), Expect(2) = 0.77
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 136 NVYHTKCATLKCSCG 180
           N+  T C+T+KCS G
Sbjct: 335 NIQITPCSTMKCSAG 349


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 25.0 bits (52), Expect(2) = 0.77
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 154 CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 240
           CAT++CS G      ++    A CP    C
Sbjct: 316 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 345



 Score = 24.2 bits (50), Expect(2) = 0.77
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 136 NVYHTKCATLKCSCG 180
           N+  T C+T+KCS G
Sbjct: 270 NIQITPCSTMKCSAG 284


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 243 VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 365
           +R     P TS ++K+K + D D+EQM+    LT  +ER  G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566


>Z69716-4|CAA93528.1|  480|Caenorhabditis elegans Hypothetical
           protein C04B4.4 protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 132 MERLSHKMCDIKMFMWNEPVKNGYWPKIRLPNGDEMPVRQNNFVP 266
           ++  S+KM D+K F  N+P K+ +    +   G   PV+  N  P
Sbjct: 392 LKMTSNKMLDLKGFSMNDPPKSRFAIANQNSEGRASPVQPKNTNP 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,522
Number of Sequences: 27780
Number of extensions: 265194
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)