Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A13
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58590.1 68416.m06530 pentatricopeptide (PPR) repeat-containi... 29 2.3
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p... 28 4.0
At5g15830.1 68418.m01852 bZIP transcription factor family protei... 28 4.0
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]... 28 5.2
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 28 5.2
At2g06820.1 68415.m00761 expressed protein low similarity to zin... 27 6.9
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 6.9
At5g33210.1 68418.m03923 zinc finger protein-related similar to ... 27 9.1
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to... 27 9.1
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral... 27 9.1
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 27 9.1
At2g25200.1 68415.m03014 expressed protein 27 9.1
>At3g58590.1 68416.m06530 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 741
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 465 MMTMFRKMLSYNQYNMDKYTYVPLLSICTLL 557
++ +F+ ML N DKYT+V +LS+C+ L
Sbjct: 529 VIELFKHMLQSN-IRPDKYTFVSILSLCSKL 558
>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
protein contains Pfam profile: PF03130 PBS lyase
HEAT-like repeat
Length = 1116
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 285 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 461
KL +LL + +QM++EG LT D + + +K D M + IL MN + +M
Sbjct: 508 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDTVMPYLKTIL--MNATDKSKRML 565
Query: 462 HMMTM 476
+M
Sbjct: 566 RAKSM 570
>At5g15830.1 68418.m01852 bZIP transcription factor family protein
similar to common plant regulatory factor 7 GI:9650828
from [Petroselinum crispum]; contains Pfam profile:
PF00170 bZIP transcription factor
Length = 186
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/92 (18%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 48 TDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKNGYWPKI-RLP 224
T+E++ +N+ +Q M +N + R RM + H + W + K+ ++
Sbjct: 65 TEEIFVINERKQRR--MVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVS 122
Query: 225 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQM 320
+ +++ +++N+ + ENL+L+ ++ ++++
Sbjct: 123 DNNDLVIQENS--SLKEENLELRQVITSMKKL 152
>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
putative / PEP carboxykinase, putative / PEPCK, putative
similar to phosphoenolpyruvate carboxykinase
[Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
(PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
(PEPCK) {Zea mays}; contains Pfam profile PF01293:
phosphoenolpyruvate carboxykinase
Length = 671
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 529 FPCSRYVHYLLTRSSI 576
FPC+RY HY+ + +S+
Sbjct: 297 FPCNRYTHYMTSSTSV 312
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 231 DEMPVRQNNFVPVTSENLKLKMLLDDV---EQMIREGILTGKIERRDGTMINLKKPED 395
DEM +++ VPV N +LKML D V ++ + EG +E N ++P+D
Sbjct: 193 DEMTFKEDK-VPVLDSNKRLKMLQDPVCGEKKEVNEGTKFEWLESSRIRDANRRRPDD 249
>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 267
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +3
Query: 267 VTSENLKLKMLLDDVEQMIREGIL 338
+TS ++K+K+LLD ++ +I+E I+
Sbjct: 151 ITSSSVKIKVLLDGLQPLIKETIV 174
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 231 DEMPV-RQNNFVPVTSENLKLKMLLDDVEQMIRE 329
DE+PV Q+ + + +EN KLK L+ +E+ I E
Sbjct: 1037 DEVPVIDQSAIIKLETENQKLKALVSSMEEKIDE 1070
>At5g33210.1 68418.m03923 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01623: putative zinc
finger domain, LRP1 type
Length = 173
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 207 PKIRLPNGDEMPVRQNNFVPVTSENL 284
P+ +LP G+ +P R +P TS +L
Sbjct: 105 PQTQLPRGESVPKRHRENLPATSSSL 130
>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
Length = 639
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 219 LPNGDEMPVRQNNFVP-VTSENLKLKMLLDDVEQMIRE 329
+P E+PV V +TSEN KLK L+ ++Q I E
Sbjct: 87 VPVLQEVPVVDTELVEKLTSENEKLKSLVSSLDQKIDE 124
>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
root primordium (LRP) protein-related similar to lateral
root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702)
Length = 252
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 207 PKIRLPNGDEMPVRQNNFVPVTSENL 284
P+ +LP G+ +P R +P TS +L
Sbjct: 197 PQTQLPRGESVPKRHRENLPATSSSL 222
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 297 LLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARL 416
+LDD+E+ + +G+ T K RD ++ ++E+ RL
Sbjct: 387 ILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELAQRL 426
>At2g25200.1 68415.m03014 expressed protein
Length = 354
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 549 YISRAGERTCTCPYYTDCNSAFF*TXSSY-GTFWHRHWPHSCH 424
YIS +G+ T TC Y+T+ F S+ H H+ +SC+
Sbjct: 41 YISTSGDATTTCQYHTNVGVFFLSWSRSFLRRSLHLHF-YSCN 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,195
Number of Sequences: 28952
Number of extensions: 241761
Number of successful extensions: 640
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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