Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A11
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    29   0.15 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   0.26 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   0.80 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   1.1  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   1.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   1.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   1.8  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   3.2  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    24   5.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   5.6  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    23   7.5  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    23   7.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    23   9.9  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    23   9.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   9.9  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    23   9.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    23   9.9  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    23   9.9  

>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 45  KPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEVKEK 191
           +PV T  +E+AE    E      V   VKV  +    Q +  P EV EK
Sbjct: 510 EPVETSPEEEAEKKTDEPVKMRKVKKLVKVADLSVSVQEDRLPTEVLEK 558


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 48  PVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEVKEKT 194
           P +    E +  P+T  TP  P A   +    + +S T  T   V  +T
Sbjct: 129 PFINALLEASSTPSTYATPSRPTAQKSETSEGEPESSTSATTTSVARRT 177


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 299 FFFGFQKWWFCLRFSYSTRNWNWS 228
           +FFG     F LR+ YS  NW ++
Sbjct: 423 YFFGSVAALFMLRYGYSNFNWEYA 446


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 57  TVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEV 182
           T  ++KAE P     P E  + P    SV   S T  T A +
Sbjct: 41  TQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASL 82


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 254 YSTRNWNWSGDWSSFSNLGIGL 189
           + +R W WS +W SF +L + L
Sbjct: 597 HPSRFWIWSANWVSFFDLNLQL 618


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 18  PSADTALEVKPVLTVSQEK--AEAPATEVTPQEPVADPVKVLSVDAKSQTEITPA 176
           P     L   P++T   ++  A   A E  PQ+P A  V  L     S + +TP+
Sbjct: 590 PEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPSAPQVTRLMAPQDSSSVVTPS 644


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 3    TSAKIPSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEV 182
            T+  I  A T    KP  +     A +P+    P  PVA+ V   S          PAEV
Sbjct: 1047 TTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSA-VPPPPPPPPAEV 1105

Query: 183  KEK 191
            ++K
Sbjct: 1106 EKK 1108


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 127 TGSATGSC-GVTSVAGASAFSWLTVNTGFTSSAVSALG 17
           T +AT +  G     G SAF   T NTGF S   +A G
Sbjct: 268 TSNATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASG 305


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 114 VADPVKVLSVDAKSQTEITPAEVKE 188
           V   +KVLSVDA S  EI     KE
Sbjct: 151 VESKIKVLSVDAPSSWEIDEGPQKE 175


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 KVLSVDAKSQTEITPAEVKEKT 194
           K+ S+D  S +EI P+E  +KT
Sbjct: 9   KIRSLDMLSNSEIKPSENSQKT 30


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 107 LWSNFSCWSFSLFLANS*YW 48
           LW  FS W FS+F   + Y+
Sbjct: 401 LWRPFSFWLFSIFCTIAAYY 420


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 73  FSWLTVNTGFTSSAVSALGILAEV 2
           F+W   +TG T S +  LGI A V
Sbjct: 252 FTWYVKSTGGTPSTLVDLGIHANV 275


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = +3

Query: 45  KPVLTVSQEKAEAPATEVTPQ----EPVADP---VKVLSVDAK-SQTEITPAEVKEK 191
           KP    +Q K E PA +VT +    E  A P       S DA+ ++T   PA   +K
Sbjct: 148 KPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPAAALKK 204


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 12  KIPSADTALEVKPVLTVSQEKAEAPATEVTPQEP 113
           K+PS+ T+   KP +  +   A A     + QEP
Sbjct: 857 KLPSSSTSQSNKPFIEKASMHAPAKGRNSSMQEP 890


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 263 RFSYSTRNWNWSGDWSSFSNL 201
           +F  +  NWNW    S +S+L
Sbjct: 94  KFFCNVNNWNWLMSVSKYSHL 114


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 148 ASTLRTLTGSATGSCGVTSVAGASAFSWLTV-NTGFTSSAVSA 23
           ++T  T TG+ TGS   TS +   + S + V  T  TS +VS+
Sbjct: 488 SNTTVTFTGTGTGSATATSSSPYYSNSSIIVPTTVSTSGSVSS 530


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 12  KIPSADTALEVKPVLTVSQEKAEAPATEVTPQE 110
           K+ +  T+  V+P+L  + +   +P +++ PQE
Sbjct: 430 KMAALPTSSPVRPMLKPTLQLQNSPLSKLVPQE 462


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = -2

Query: 287 FQKWWFCLRFSYSTRNWN 234
           +  WW C  +    R WN
Sbjct: 356 YDDWWNCWTWDQFARTWN 373


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 299 FFFGFQKWWFCLRFSY 252
           FF+  + WWF ++  Y
Sbjct: 53  FFYPKRNWWFFIKMRY 68


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 188 FFDFCWRYFSLRLSIHTKNF--NGISDWFLW 102
           F  FCW + +L L +   +F  N + +   W
Sbjct: 177 FSQFCWTHMTLLLVVGQSHFMINNLFEGLFW 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,158
Number of Sequences: 5004
Number of extensions: 13461
Number of successful extensions: 71
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)