Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A11
(303 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 34 0.021
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family... 31 0.20
At3g11060.1 68416.m01335 hypothetical protein 29 0.79
At4g31660.1 68417.m04496 transcriptional factor B3 family protei... 28 1.4
At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)... 27 1.8
At1g12080.2 68414.m01397 expressed protein 27 2.4
At1g12080.1 68414.m01396 expressed protein 27 2.4
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 27 3.2
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 26 4.2
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00... 26 5.6
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 26 5.6
At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containi... 26 5.6
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ... 25 7.4
At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26... 25 7.4
At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domai... 25 9.7
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 25 9.7
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-... 25 9.7
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 33.9 bits (74), Expect = 0.021
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 57 TVSQEKAEAPAT-EVTPQEPVADPVKVLSVDAKSQTEITPAEVKEK 191
T +EK+ APAT E +E +A P +++ K +T + PA V+ K
Sbjct: 155 TKEEEKSAAPATVETKKEEILAAPAPIVAETKKEETPVAPAPVETK 200
>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
protein
Length = 571
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 18 PSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAK---SQTEITPAEVK 185
P ++ +EVK V ++ +E A PA+++ + PVK S AK SQ I P K
Sbjct: 250 PVENSNVEVKRVSSLMEEMASIPASKLFSSPITSTPVKTTSSLAKPTSSQINIAPTPTK 308
>At3g11060.1 68416.m01335 hypothetical protein
Length = 213
Score = 28.7 bits (61), Expect = 0.79
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -2
Query: 197 IGLFFDFCWRYFSLRLSIHTKNFNGISDWFLWSNFSCWSFSLFLAN 60
I LFF + + F + ++++K++NG++ F+ S + SF LF N
Sbjct: 149 ITLFFGWLFGLFGIFEALYSKDYNGVA-LFVTSLYVLVSFGLFAYN 193
>At4g31660.1 68417.m04496 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424; contains
Pfam profile PF02362: B3 DNA binding domain
Length = 251
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 278 WWFCLRFSYSTRNWNWSGDWSSFS-NLGIGL 189
W L+F S+R + G W+SFS ++G+ L
Sbjct: 214 WTLILKFRNSSRTFYMRGGWTSFSMSMGLNL 244
>At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)
identical to MLH1 protein [Arabidopsis thaliana]
GI:3893081
Length = 737
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 54 LTVSQEKAEAPATEVTPQEP 113
LT E+ E+PAT + P+EP
Sbjct: 7 LTAEMEEEESPATTIVPREP 26
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 3 TSAKIPSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAE 179
T K D EV V +E+ E A EVT V + K V + QTE+ AE
Sbjct: 72 TEKKTEEKDEKTEVITETPVVEEE-EKKAEEVTETPAVVEEEKKTEVVEEKQTEVAAAE 129
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 3 TSAKIPSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAE 179
T K D EV V +E+ E A EVT V + K V + QTE+ AE
Sbjct: 38 TEKKTEEKDEKTEVITETPVVEEE-EKKAEEVTETPAVVEEEKKTEVVEEKQTEVAAAE 95
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 27 DTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEVKE 188
DTA+E+K + +EKA A EVT + + ++ DAK + V+E
Sbjct: 132 DTAVEIKERIEEEREKARAMVKEVT---AMLEKASTMADDAKGVAQKVVKMVEE 182
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 6 SAKIPSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEVK 185
+A+ P+ +TA + + AEAPA+E T PV PV +V E ++
Sbjct: 1189 AAESPAPETAAVAESPAPGTAAVAEAPASE-TAAAPVDGPV-TETVSEPPPVEKEETSLE 1246
Query: 186 EKTD 197
EK+D
Sbjct: 1247 EKSD 1250
>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
F-box domain
Length = 472
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 170 RYFSLRLSIHTKNFNGI 120
R+ LR +HTK FNGI
Sbjct: 330 RHLVLRTKMHTKEFNGI 346
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 18 PSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADP 125
P+A L + + +QE + A T ++ Q+PV+ P
Sbjct: 978 PTAKPGLNIATPASGNQESSSADVTPISSQDPVSLP 1013
>At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 302
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 54 LTVSQEKAEAPATEVTPQEPVADP 125
L V+Q+ E P E PQEP+ P
Sbjct: 92 LGVNQDSRETPKPEQYPQEPLPPP 115
>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
fasciclin domain-containing protein contains Pfam
profile PF02469: Fasciclin domain
Length = 445
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 27 DTALEVKPVLTVSQEKAEAPATEVTPQEPVADPV 128
D + V+ + V K E PATE+ P PV V
Sbjct: 388 DGRISVQGIDGVLFPKEETPATEIKPAAPVVKKV 421
>At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26569
Histone H1.2 {Arabidopsis thaliana}
Length = 273
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 21 SADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKS 155
S A+ KP KA +T +P + VA P K ++V K+
Sbjct: 208 SKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKA 252
>At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 219
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +3
Query: 60 VSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEVKEKT 194
+ E E P E E + P S EITPAE KT
Sbjct: 166 IVDEMPEVPTKESEESEKLDLPDVPTKTPVASNAEITPAESATKT 210
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 6 SAKIPSADTALEVKPVLTVSQEKAEAPATEVTPQEPVADPVKVLSVDAKSQTEITPAEVK 185
+A PS + + + P+L S K A A + + PVA P S K++T T ++V
Sbjct: 158 TAPAPSVKSPVAL-PILNPSTVKENATAPVASAKAPVALPSINPSPVMKNETLPTTSKVP 216
Query: 186 EK 191
E+
Sbjct: 217 ER 218
>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
domain-containing protein-related contains weak hit to
Pfam F00627: UBA/TS-N domain; supported by tandem
duplication of ubiquitin-associated (UBA)/TS-N domain
protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
thaliana]
Length = 508
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 48 PVLTVSQEKAEAPATEVTPQEP 113
PV++ SQE AEAP +P++P
Sbjct: 258 PVVSASQESAEAPPN--SPEQP 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,481,175
Number of Sequences: 28952
Number of extensions: 68879
Number of successful extensions: 226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -