Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A10
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   1.2  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   2.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   3.6  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   6.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    23   8.3  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    23   8.3  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 88  ILQHEQQLKAPRLLQTSTFLLNRVTIYSN 2
           ILQ +QQ  APRL  T T   N    +SN
Sbjct: 545 ILQQQQQQSAPRLEPTKTGSNNPFAQFSN 573


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 223 VPTVAVCIGLRIYPWLTGKPV 161
           VP + +C G++   WL G+ V
Sbjct: 90  VPVLGICYGMQEIAWLNGRCV 110


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 111 PSPSAYLLTSRNMVLVVT 164
           PSP   +LT +N+ LV+T
Sbjct: 834 PSPRQLVLTKKNLYLVIT 851


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 95  TYLGRAVSIGISPNITE 145
           +YL R V I IS N+TE
Sbjct: 249 SYLTRLVDIAISKNVTE 265


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 194 SHLPLVNW*TSHN 156
           S +PLVNW TS N
Sbjct: 89  SRIPLVNWKTSTN 101


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 159 QPVPCSVMLGDMPMETALPRYVM-RYSSMSNN*KRRD 52
           + VPC++ + D+P +  L  +V+ RY       K+R+
Sbjct: 262 EDVPCNICITDIPSKEDLQNWVVARYPVHPAKTKQRE 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,703
Number of Sequences: 5004
Number of extensions: 22716
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)