Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A10
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0081 + 623135-623470                                             28   0.97 
07_01_0087 + 676501-677907                                             26   3.9  
12_01_0562 - 4555384-4555673,4555775-4555883,4555981-4556084,455...    26   5.2  
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400...    26   5.2  
03_02_0208 + 6420576-6420658,6421640-6421753,6421848-6422379,642...    25   6.8  
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    25   6.8  
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     25   9.0  
07_01_0595 - 4432642-4432926,4433062-4433769,4433964-4434164,443...    25   9.0  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    25   9.0  

>01_01_0081 + 623135-623470
          Length = 111

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 220 PTVAVCIGLRIYPWLTGKPVTTSTMF 143
           PT    I  + +PW    P TT+TMF
Sbjct: 50  PTTPAGISTQPFPWAEPSPTTTTTMF 75


>07_01_0087 + 676501-677907
          Length = 468

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 247 IEINRDDWVPTVAVCIGLRIYPWLTGKPVTTSTMFRD 137
           +E  RDD+  +  V  GLR++ W++  P TT T   D
Sbjct: 426 LETFRDDYHDSDLVADGLRLHGWIS--PATTLTQQGD 460


>12_01_0562 -
           4555384-4555673,4555775-4555883,4555981-4556084,
           4556643-4556946
          Length = 268

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 182 RVNAKSNAHCDGWDPIVPVYF 244
           R + KS  H  GW PI+P  F
Sbjct: 108 RPDDKSGGHGVGWSPIIPYSF 128


>03_02_0812 -
           11439258-11439409,11439537-11439612,11439860-11440076,
           11440150-11440350,11440673-11440872,11440955-11441075,
           11441596-11441636,11441714-11441822,11442037-11442281,
           11442382-11442496,11442970-11443064,11444279-11444535,
           11444780-11444999,11445473-11445556
          Length = 710

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 193 RIYPWLTGKPVTTSTMFRDVRRYADGDGPT 104
           ++  WL   P+T + M RDV+   D  G T
Sbjct: 78  KVPDWLEATPLTENIMSRDVQLAYDSGGET 107


>03_02_0208 +
           6420576-6420658,6421640-6421753,6421848-6422379,
           6422452-6422605,6422655-6422947
          Length = 391

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 196 VQCTLRRLGPNRPGLFL 246
           V C +RRLG +RPG+ L
Sbjct: 172 VYCPMRRLGLDRPGVHL 188


>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 226 WVPTVAVCIGLRIYPWLTGKPVT 158
           W   +   I L ++PWL G P+T
Sbjct: 506 WSLLLVYMIYLLVFPWLFGHPIT 528


>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -1

Query: 178 LTGKPVTTSTMFRDVRRYADG 116
           ++ +PVT+++ ++ VRRY +G
Sbjct: 371 MSHRPVTSTSCYQHVRRYVNG 391


>07_01_0595 -
           4432642-4432926,4433062-4433769,4433964-4434164,
           4434296-4435288
          Length = 728

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 210 QCALDFAFTLG*LVNQSQPVPCSV 139
           QCA D A  L  L +   PVPC+V
Sbjct: 52  QCAEDPALLLSRLPDPIHPVPCTV 75


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 277 HQNSNRIRGLIEINRDDWVPTVAVCIGL 194
           H +SNR     + N +DWV TV   +GL
Sbjct: 295 HNDSNRYE--FKTNHEDWVNTVKPKLGL 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,034,822
Number of Sequences: 37544
Number of extensions: 158418
Number of successful extensions: 311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)