Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A10
         (283 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)                  30   0.33 
SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.58 
SB_31368| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)                   26   4.1  
SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094)                   26   5.4  
SB_50356| Best HMM Match : PaaX (HMM E-Value=3.6)                      26   5.4  
SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_12361| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_7378| Best HMM Match : SCP (HMM E-Value=3.3e-29)                    25   7.1  
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_24704| Best HMM Match : COX2 (HMM E-Value=3.1)                      25   7.1  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)                     25   9.4  
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)              25   9.4  

>SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)
          Length = 435

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 214 VAVCIGLRIYPWLTGKPVTTSTMFRDVRRYAD 119
           VA CI L I+PWL   P+ +S +F+  R   D
Sbjct: 235 VATCI-LNIFPWLIHFPLKSSRLFKGFRNTRD 265


>SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 186 TLG*LVNQSQPVPCSVMLGDMPMETALPRYVMRYSSMSNN*KR 58
           T G +++  QP P  + LG  P E  L R  M    M N   R
Sbjct: 301 TAGIVIHVPQPPPARLKLGHTPQEELLSRQSMEIMEMENQFNR 343


>SB_31368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 217 TVAVCIGLRIYPWLTGKPV-TTSTMFRDVRRYAD 119
           T+ +C  +R+ PW   KPV   + + R  RR AD
Sbjct: 47  TLHLCFEVRLVPWTRVKPVQLANELVRVARRGAD 80


>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
          Length = 494

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 121 DGDGPT*ICHAILQHEQQLKAPRLLQTSTF 32
           D DG T +CHA   + +QL +  L +T +F
Sbjct: 67  DSDGMTALCHAAKLNREQLVSVILEETHSF 96


>SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094)
          Length = 322

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -1

Query: 274 QNSNRIRGLIEINRDDWVPTVAVCIGLRIYPWLTGKPVTT-STMFRDVRRYADGDGPT*I 98
           Q S  +  L +  R   +P   +   + +   + G  +   STM  D ++    DG T +
Sbjct: 140 QRSRMLANLYKDERCQHLPAYGILEKMYLDRIIRGPELQEFSTMLMDHQKAKTADGSTIL 199

Query: 97  CHAILQHEQQLKAPRLLQTSTF 32
             A+++H   L A +L    TF
Sbjct: 200 DRAVIEH-NLLSASKLYNNITF 220


>SB_50356| Best HMM Match : PaaX (HMM E-Value=3.6)
          Length = 210

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 10  RLLLY*AKMSKF-VIISALLVVAHAGVSHDISR*GRLHRHIS*HHGT 147
           + LLY   + +   ++ ALL   HA + HDI+R    H +++  HGT
Sbjct: 60  KTLLYDTLVRRIDTLLDALLDARHAYIRHDITR--ARHCYMTRWHGT 104


>SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 220 PTVAVCIGLRIYPWL--TGKPVTTSTMFRDVR 131
           P+V  C  +  Y WL  TGK +TTS ++ D +
Sbjct: 168 PSVHGC-AIHSYDWLIETGKSLTTSDVYHDAK 198


>SB_12361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 119 WRRPYLDMSCDTPA*ATTKSAEIITNFDI 33
           W R  L + C +P    TK+ + ++N D+
Sbjct: 80  WSRMALRVRCRSPELLVTKTGQCVSNLDV 108


>SB_7378| Best HMM Match : SCP (HMM E-Value=3.3e-29)
          Length = 264

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 93  MRYSSMSNN*KRRDYYKLRHF 31
           MRY+ +++N +RR  Y LR+F
Sbjct: 72  MRYNGITDNMQRRAIYTLRNF 92


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 71  LLMLEYRMTYLGRAVSIGISPNITEHGTGCDWF----TS*PRVNAKSNAHCDGWDPI 229
           L ++ YR+ Y G+   IG+ P +  H     +     TS  +V +K  AH +   P+
Sbjct: 730 LNIVVYRIKYCGQGNHIGLKPRVVHHNQLKPFLGSLDTSEVQVASKPQAHNEHQTPL 786


>SB_24704| Best HMM Match : COX2 (HMM E-Value=3.1)
          Length = 163

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 144 NMVLVVTGLPVNQG*MRSPMH 206
           NM LVVT L VN   M +P+H
Sbjct: 11  NMTLVVTPLQVNMTLMVTPLH 31


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 214  VAVCIGLRIYPWLTGKPVTTSTMFRDV 134
            + VCI LRI  +L GKP ++ ++ + V
Sbjct: 2705 MVVCIDLRIPLFLVGKPGSSKSLAKTV 2731


>SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 190 IYPWLTGKPVTTSTMFRDVRRYADGDGPT*ICH 92
           I+P+++G     + + ++  R+  G GP+  CH
Sbjct: 818 IHPYVSGYSRACTPLTKEPHRWNSGPGPSEKCH 850


>SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)
          Length = 350

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 170 TS*PRVNAKSNAHCDGWDPIVP 235
           TS PRV     AHC  WD   P
Sbjct: 53  TSDPRVQVPRKAHCLIWDQAPP 74


>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 526

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -1

Query: 238 NRDDWVPTVAVCIGLRIYPWLTG---KPVTTSTMFRDVRRYADGDGPT 104
           NR  W P+  + +GL+  P+  G   +P      F+   + A   G T
Sbjct: 75  NRTIWTPSPRIRLGLKTQPFCYGNGYRPHMILNCFKPTEKTAGASGKT 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,374,286
Number of Sequences: 59808
Number of extensions: 190394
Number of successful extensions: 327
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)