Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A10
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   1.2  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   1.2  
AC006695-16|AAK71874.1|  364|Caenorhabditis elegans Seven tm rec...    27   1.6  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z81077-15|CAN99680.1|  664|Caenorhabditis elegans Hypothetical p...    26   4.8  
Z81077-14|CAN99679.1|  662|Caenorhabditis elegans Hypothetical p...    26   4.8  
Z81077-2|CAD56583.2|  656|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z81077-1|CAB03066.2|  658|Caenorhabditis elegans Hypothetical pr...    26   4.8  

>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 254 WSNRNKPGRLGPNRRSVHWTSHLPLVNW 171
           WSN   P  + P R   HW   L  V W
Sbjct: 222 WSNSRLPKCVEPERNKTHWDYLLEEVKW 249


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 254 WSNRNKPGRLGPNRRSVHWTSHLPLVNW 171
           WSN   P  + P R   HW   L  V W
Sbjct: 222 WSNSRLPKCVEPERNKTHWDYLLEEVKW 249


>AC006695-16|AAK71874.1|  364|Caenorhabditis elegans Seven tm
           receptor protein 206 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 97  CHAILQHEQQLKAPRLLQTSTFLLNRVTIY 8
           C+ IL    QLK+P+ L T  +L+N ++I+
Sbjct: 24  CNGILMILIQLKSPKQLGTYKYLMNFISIF 53


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 30  KNVEVCNNLGAFSCCSCWSI 89
           +NV VC +  AF C +C+S+
Sbjct: 695 ENVRVCVHCSAFYCINCFSV 714


>Z81077-15|CAN99680.1|  664|Caenorhabditis elegans Hypothetical
           protein F36A2.1d protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 166 PVTTSTMFRDVRRYADGDGPT*ICHAILQH 77
           P  TS    D R  +DG+GP+    A+ QH
Sbjct: 398 PAITSAPLSDPRIRSDGEGPSQYAIALKQH 427


>Z81077-14|CAN99679.1|  662|Caenorhabditis elegans Hypothetical
           protein F36A2.1c protein.
          Length = 662

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 166 PVTTSTMFRDVRRYADGDGPT*ICHAILQH 77
           P  TS    D R  +DG+GP+    A+ QH
Sbjct: 396 PAITSAPLSDPRIRSDGEGPSQYAIALKQH 425


>Z81077-2|CAD56583.2|  656|Caenorhabditis elegans Hypothetical
           protein F36A2.1b protein.
          Length = 656

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 166 PVTTSTMFRDVRRYADGDGPT*ICHAILQH 77
           P  TS    D R  +DG+GP+    A+ QH
Sbjct: 390 PAITSAPLSDPRIRSDGEGPSQYAIALKQH 419


>Z81077-1|CAB03066.2|  658|Caenorhabditis elegans Hypothetical
           protein F36A2.1a protein.
          Length = 658

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 166 PVTTSTMFRDVRRYADGDGPT*ICHAILQH 77
           P  TS    D R  +DG+GP+    A+ QH
Sbjct: 392 PAITSAPLSDPRIRSDGEGPSQYAIALKQH 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,825,330
Number of Sequences: 27780
Number of extensions: 135488
Number of successful extensions: 245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)