Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A10
         (283 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77090.1 68414.m08978 thylakoid lumenal 29.8 kDa protein iden...    26   3.4  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    26   4.5  
At1g59312.1 68414.m06676 hypothetical protein                          26   4.5  
At1g58936.1 68414.m06664 hypothetical protein                          26   4.5  
At1g58643.1 68414.m06656 hypothetical protein                          26   4.5  
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    25   5.9  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    25   5.9  
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi...    25   7.8  
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi...    25   7.8  

>At1g77090.1 68414.m08978 thylakoid lumenal 29.8 kDa protein
           identical to SP|O49292|TL30_ARATH (Arabidopsis
           thaliana);contains a PsbP domain AF370571; SIMILAR TO
           GI:13926195--F22K20.16
          Length = 260

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 182 RVNAKSNAHCDGWDPIVPVYF 244
           R + KS  H  GW PI+P  F
Sbjct: 98  RPDEKSGGHGVGWSPIIPYAF 118


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 80   LEYRMTYLGRAVSIGISPNITEHGTGC 160
            L+Y+  + G  V   I P+   HG GC
Sbjct: 1273 LDYKFLHKGLLVQAFIHPSYNRHGGGC 1299


>At1g59312.1 68414.m06676 hypothetical protein
          Length = 486

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 162 SQPVPCSVMLGDMPMETALPRYVMRYSSMSNN*KRRDYYKLRHF 31
           S  + CSVM+   P+ET L R     +    + K+   YK+ HF
Sbjct: 404 STAIDCSVMISFRPIETGLSRSSSHGNIQLESTKQEFEYKI-HF 446


>At1g58936.1 68414.m06664 hypothetical protein
          Length = 486

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 162 SQPVPCSVMLGDMPMETALPRYVMRYSSMSNN*KRRDYYKLRHF 31
           S  + CSVM+   P+ET L R     +    + K+   YK+ HF
Sbjct: 404 STAIDCSVMISFRPIETGLSRSSSHGNIQLESTKQEFEYKI-HF 446


>At1g58643.1 68414.m06656 hypothetical protein
          Length = 486

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 162 SQPVPCSVMLGDMPMETALPRYVMRYSSMSNN*KRRDYYKLRHF 31
           S  + CSVM+   P+ET L R     +    + K+   YK+ HF
Sbjct: 404 STAIDCSVMISFRPIETGLSRSSSHGNIQLESTKQEFEYKI-HF 446


>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 105 PRYVMRYSSMSNN*KRRDYYKLRHFC 28
           PR ++   +  +N  RRD YK++H C
Sbjct: 7   PRCIVSDPAHPHNVSRRDNYKVKHNC 32


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 148 MFRDVRRYADGDGPT*ICHAILQHEQQLKAPRLLQ 44
           +F D R  AD      I  A LQHEQ ++  RL +
Sbjct: 428 LFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFK 462


>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   WNRLLLY*AKMSKF-VIISALLVVAHAGVSHDI 99
           +N+LL   AKM+KF ++IS    +   G+SHD+
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDL 118


>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1133

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   WNRLLLY*AKMSKF-VIISALLVVAHAGVSHDI 99
           +N+LL   AKM+KF ++IS    +   G+SHD+
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,394,159
Number of Sequences: 28952
Number of extensions: 123874
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)