Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_A06
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 29 0.37
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 29 0.37
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 28 1.1
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 26 4.6
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.6
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 8.1
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 8.1
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.5 bits (63), Expect = 0.37
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 90 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 269
L IF+K +++ ++ FES K+ FH ++ W++ D EEV D+QR +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304
Query: 270 VARHVLGAA 296
R ++ A
Sbjct: 305 YERCLITCA 313
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 0.37
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 17/143 (11%)
Frame = +3
Query: 54 LHSVKNYEAIRFLDIFEKTFVQSLQKGKFESY-------GKKIDFHDEKAINFVGNYWQE 212
LH + N E + FL +K L + +SY G+ + + + +
Sbjct: 309 LHGLANQEVLNFLITMKKEIGDDLSEETIKSYLWKLLNSGRVVPGYGHAVLRKTDPRYTA 368
Query: 213 NADLYEEEVTKD-----YQRSYEIV----ARHVLGAAPKP-FDKHTFMPSALDFYQTGLR 362
+ E + KD R YEIV H P P D H+ + L +Y GL+
Sbjct: 369 QREFALEHLPKDPMFQLVSRLYEIVPGVLTEHGKTKNPYPNVDSHSGV--LLQYY--GLK 424
Query: 363 EPAFYQLYYRIVGYINAFSRFLW 431
E +FY + + + + S+ +W
Sbjct: 425 EQSFYTVLFGVSRTLGVASQLIW 447
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 84 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 182
+FL+I+ +T + L G E G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.1
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +1
Query: 103 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 276
K+L + K + + + +T+ R+ L +T + +C K+ + I DL+ SL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257
Query: 277 -AMCSVQHLNHSTSTPSCPVRLTFTKPDFENLHSISYIT 390
A +Q + TS+ S PV L T N + +T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPATPSIVTNKQMMDDLT 296
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 3 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 95
L+ SYY PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 315 HTFMPSALDFYQTGLREPAFYQLYYRIVGYINAFSRFLWPFTL 443
+ + AL Y E +++Y + + ++FLWPFTL
Sbjct: 172 NALIEEALGKYDVISIEDIIHEIY-NVGSHFKEVTKFLWPFTL 213
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 4.6
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 181 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRLTFTKPD 357
+L S TI P+C++ K + +N L+L+ + L TS P CP++L PD
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL--PSPD 283
Query: 358 FENLHSIS 381
+ + S S
Sbjct: 284 QKPMTSFS 291
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 102 EKTFVQSLQKGKFESYGKKIDFHDEKAIN 188
EKT V+S+ K + + G DFH E A N
Sbjct: 12 EKTHVESIVKFEDSNRGTITDFHIETANN 40
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +1
Query: 127 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 306
RK R+ ++ + + L + IC Q I L + C L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122
Query: 307 STSTPSCPVRL 339
S+S P C +L
Sbjct: 1123 SSSCPMCKTKL 1133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,361
Number of Sequences: 5004
Number of extensions: 49291
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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