Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A06
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   2.4  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    29   2.4  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical...    29   2.4  
AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical...    29   2.4  
AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical...    29   2.4  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   2.4  
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical ...    29   3.2  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   5.6  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    27   7.4  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    27   7.4  
AF045640-3|AAM81120.1|  344|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 232 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPDFENLHSISYIT 390
           K+ Q+  ++L K++       H + STS+   P  +TF+ P FE   + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 253 NDLMKLSLAMCSVQHLNHSTSTPSCPV--RLTFTKPDFENLHSISYI--TGLWVTLT 411
           ND  +L    C    L H+ S    P+  R TF  PD  + H I +I   G +VT T
Sbjct: 110 NDTGELLTTFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANGKFVTDT 166


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 171 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 85
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 43  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 253 NDLMKLSLAMCSVQHLNHSTSTPSCPV--RLTFTKPDFENLHSISYI--TGLWVTLT 411
           ND  +L    C    L H+ S    P+  R TF  PD  + H I +I   G +VT T
Sbjct: 281 NDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANGKFVTDT 337


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 253 NDLMKLSLAMCSVQHLNHSTSTPSCPV--RLTFTKPDFENLHSISYI--TGLWVTLT 411
           ND  +L    C    L H+ S    P+  R TF  PD  + H I +I   G +VT T
Sbjct: 20  NDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANGKFVTDT 76


>AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7c protein.
          Length = 187

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 226 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 336
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P +
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK 138


>AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7b protein.
          Length = 214

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 226 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 336
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P +
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK 165


>AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7a protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 226 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 336
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P +
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK 211


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 171 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 85
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 35  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 51  NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 230
           NL+  KN+  I++ D F  T   +++ G   S G   +  D    N  G  +    D Y 
Sbjct: 93  NLYLFKNHSDIQYYDRFSSTGYINVRSGHQHSIGS--NECDGFIQNTFGQNYTFRRDFYN 150

Query: 231 EEVTKDY--QRSYEIVAR 278
           ++ T+D   QR+  ++AR
Sbjct: 151 DDGTRDLANQRTGFLLAR 168


>AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical
           protein C13B7.6 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 473 LTPTTMKKSL---ESKRPEETRKCVNVTHNPV 387
           LTP + KK L   E+K P+  +  +NVT NPV
Sbjct: 162 LTPKSAKKKLKLAENKEPDFLKALLNVTGNPV 193


>AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical
           protein Y45G12C.16 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 473 LTPTTMKKSL---ESKRPEETRKCVNVTHNPV 387
           LTP + KK L   E+K P+  +  +NVT NPV
Sbjct: 165 LTPKSAKKKLKLAENKEPDFLKALLNVTGNPV 196


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 HDEKAINFVGNYWQENADLYEEEV 239
           HDE A+N    Y+Q + DL E++V
Sbjct: 75  HDELAVNNADEYFQGDVDLSEQQV 98


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
           protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 235 KLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPDFEN 366
           ++ R I+ + ++ +  C++   NH   TP   V ++ TK  FEN
Sbjct: 834 RVLRAIDTIHQVGIYCCALVPANHLPKTPLGGVHVSETKQRFEN 877


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 103  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 261
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 103  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 261
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>AF045640-3|AAM81120.1|  344|Caenorhabditis elegans Hypothetical
           protein C11D2.4 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 434 FYSRETSSSSSALIIDDVVVEKLVTFFDYGQFDATNSVFLTKKEI 568
           FY+    S  SA  +  ++VE  V+F D+ +F+      L + +I
Sbjct: 167 FYNCVIKSEKSAQTLLKLIVENFVSFRDFAEFNGQKVSLLKRAQI 211


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 142 NRMARKLISTMKRQLTLSETIG--KRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTS 315
           +++   +  T K     SET+   K+ P  MKK ++ +  +L K S ++     ++HS S
Sbjct: 498 DKLLESVQQTAKSVSQFSETLASVKKIPDAMKKNVKNVTLELNKRSESLNQSDAISHSAS 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,913
Number of Sequences: 27780
Number of extensions: 274647
Number of successful extensions: 885
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)