Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A06
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.98 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.7  
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.7  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   4.0  
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    28   5.2  
At5g41830.1 68418.m05093 F-box family protein-related contains a...    27   9.1  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    27   9.1  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   9.1  

>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 151 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 294
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 75  EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 194
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +1

Query: 130 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 309
           K++ + ++ KLIS +K     S+ I +R  +  K+ L    N +   S    S++HL H 
Sbjct: 49  KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103

Query: 310 TSTPSCPVRLTFTKPDF 360
           +S+PS  V L+   P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 153 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 251
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
 Frame = +3

Query: 42  DNYNLHSVKNYEAIRFLDIFEKTFVQSLQK-GKFESYGKKIDFHDEKAINFVGNYWQENA 218
           DN  LHSV + EA     IFE   V+  +  G      +++   ++  + F+ N   EN 
Sbjct: 33  DNNRLHSVFDAEASL---IFESWMVKHGKVYGSVAEKERRLTIFEDN-LRFINNRNAENL 88

Query: 219 DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQT 353
             Y   +T     S         GA P+P   H FM S+ D Y+T
Sbjct: 89  S-YRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSS-DRYKT 131


>At5g41830.1 68418.m05093 F-box family protein-related contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At3g44180, At1g56610,
           At3g58890, At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 463

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 163 ISTMKRQLTLSETIGKRTPICM-KKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRL 339
           I+   + +     +  R  +C   K+++   N++ KL + +C+V+ L  +          
Sbjct: 221 IADKYQHVRFDSLVEARLGLCKTSKQIKNDNNNVTKLFMGICNVKILYLTEDALKVLGCC 280

Query: 340 TFTKPDFENLHSISYITGLWV 402
             T P FENL  ++  TGL V
Sbjct: 281 RETMPVFENLIQLTIKTGLHV 301


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 396 QSCNIADRMQVLEVRFGKSQAHW 328
           Q C++ D++Q L  R  KS  HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 85  GSWTFLKRLSYSPY 126
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,562
Number of Sequences: 28952
Number of extensions: 246921
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)