Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A05
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.9  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   3.3  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   4.3  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    26   5.7  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.6  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.6  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   7.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   7.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   10.0 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   10.0 
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   10.0 

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 421 VSLKFVHTLRLESVSYGHSLMQLQIAS 341
           VS +F H LRL+ V+  H +   +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 249 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCP 139
           ++ S S  H  SQ  PG  S P  P   + G   ++CP
Sbjct: 66  ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCP 103


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 473 LGAVPRGAVPPRADRVLRDLQG 538
           LG V RG +P   DR+L  LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +3

Query: 141 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRV 320
           +I   E  E      L+   F EAERA  + I +  + AP+ ++ L  P        G V
Sbjct: 3   NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAPTQHTSTLIGHV 62

Query: 321 CEINEHGEAI 350
                  E +
Sbjct: 63  LTSRTGSETV 72


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 1/148 (0%)
 Frame = +3

Query: 120 SAGLPRGDISESEHLEN-GMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMK 296
           S G     IS  E  +N G+ E  D     E++  +  E  +     P     LDD  + 
Sbjct: 12  SNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFLEELDDDHLH 71

Query: 297 VHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNETWSSDCEVYRQRCLCLDHS 476
              + G +  +N  GE +   +++C       + +        + +  + +Q    L  +
Sbjct: 72  ELVTNGGILYMNSLGEGVSGSVRKC--RIRGTQMIFAMKTVLAAPNTALQKQLLRELKIN 129

Query: 477 ELCRGAQYHHVQIEYYGTCREMPECSEN 560
             C         ++YYG C    EC  N
Sbjct: 130 RSCTSPYI----VKYYGACYNNAECQLN 153


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 303  CSAGRVCEINEHGEAICNCIKEC 371
            C+A R+C++ E       C+ +C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 513 IEYYGTCREMPECSENEMSDFPRRMRDWAVQHNARTGR 626
           + + GTC +M    E E  ++   +  W +  N  TGR
Sbjct: 102 VTFVGTCPDMCPEYEREQREYQNNLERWEI--NPETGR 137


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 273 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 419
           NL     K++   G +  +  HG  I  CIK+    +  + K  T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 597  PSRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAP--RGTAPSGRGRGSAVGTPRSPMT 424
            PS   +    +F +   PAF   S ++++   GTAP    +AP+      + G   S M 
Sbjct: 915  PSTNSSTAPFSFGTSNKPAFSFGSATSKTTSEGTAPAASASAPAPTTSAFSFGASNSSMN 974

Query: 423  R 421
            +
Sbjct: 975  K 975


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 286 GSSRLISLSGASRDSFRISETRALSAS 206
           G+ +L     +SRD+FR ++T+A S+S
Sbjct: 47  GNKKLKESQFSSRDNFRTTQTQASSSS 73


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 304 AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 426
           ++P+ +  STST   S+  S  + T+PT G    Q  +  G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 504 GGTAPRGTAPSGRGRGSAVGTPRSPMTRS 418
           GGT   G  PS    GSA+  P++   R+
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQATPFRT 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,846
Number of Sequences: 5004
Number of extensions: 50638
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)