Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A03
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.19 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.2  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.2  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   7.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   7.3  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   9.6  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   9.6  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 170 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 277
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 203 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 343
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +2

Query: 230  FFSQPSNGP----SGNYEPISTGPAFVDF 304
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 260 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 352
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 236 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 325
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 35  NSTLFDNESFRVFLLRRIGXMAAANRVHVVDH 130
           N+ L+ NE+   FL+      AA  R+H+  H
Sbjct: 110 NTPLYFNENDNAFLISTNAYSAAQERLHIWKH 141


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 14  DEDYSADNSTLFDNESFRVFLLRRIGXMAAANRV 115
           + +Y+ +N  LFD  S  +F  +R+G      R+
Sbjct: 202 NSEYALNNPNLFDFRSGYIFPFQRVGATVPKKRL 235


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
 Frame = +2

Query: 20  DYSADNSTLFD-NESFRVFLLRRIGXMAAANR---------VHVVDHNPDYNPGQVHVVD 169
           D    N TL + NE  +  +L   G M   N          ++V+D +  +N   +++ +
Sbjct: 64  DLEQANKTLLEQNEDIKFIILLNCGTMVDLNNYLVSMEDVSIYVIDSHRPHNLNNIYIEN 123

Query: 170 NSGVPSDGN 196
           N  V  DG+
Sbjct: 124 NIFVFDDGD 132


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 380 YLYETFTSHHGREGCRIAWVDNWD 309
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,407
Number of Sequences: 5004
Number of extensions: 42910
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)