Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A03
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    31   0.79 
12_02_0216 + 15804110-15804284,15804341-15804351                       30   1.4  
12_01_0495 - 3935395-3937110                                           29   3.2  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   4.2  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   4.2  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   7.4  
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420...    27   7.4  
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614...    27   9.8  

>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 113 VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 253
           V+ V    + +PG   +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 41  VYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 173 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 295
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>12_01_0495 - 3935395-3937110
          Length = 571

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 89  GXMAAANRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSD--HVVIANPDP 229
           G +A A      DH   Y+    HVVD    P  G  D  HV +A P P
Sbjct: 330 GHLAQAAAAPEQDHYLGYHSHDAHVVDAEATPEQGYHDDAHVAVA-PAP 377


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 224 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 334
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 359 SHHGREGCRIAWVDNWDD*NRR 294
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 317 YPPKRYDNPLARGGK 361
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>11_01_0532 +
           4201374-4201401,4201475-4202652,4204316-4204670,
           4204791-4204864,4206965-4207056,4207500-4207573,
           4207680-4207822,4207889-4207909
          Length = 654

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 125 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 289
           DH+ D +   V+  D+S VP D + D  +    DP           + EP+S  P
Sbjct: 40  DHSDDSDSAAVNEDDDSAVPEDAD-DETLAGAEDPVLDLREAEVLPSAEPVSAFP 93


>07_03_0380 +
           17460078-17460782,17461194-17461252,17461388-17461492,
           17461732-17461867,17461919-17461939
          Length = 341

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 74  LLRRIGXMAAANRV-HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIA 217
           +LR    + A  R+ H+V+  P +  G+   V  + VP DG  +H+V++
Sbjct: 267 MLRDPRRLYAPGRLYHIVERKP-FRCGRYPPVVRTAVPVDGRFEHIVLS 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,800,487
Number of Sequences: 37544
Number of extensions: 298304
Number of successful extensions: 654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)