Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A03
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_43486| Best HMM Match : RdRP (HMM E-Value=2.4e-27)                  27   7.6  
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 27   7.6  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   7.6  
SB_2837| Best HMM Match : RdRP (HMM E-Value=2.4e-27)                   27   7.6  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -1

Query: 236  RRKDPGSQ*QRGHYCRPME--HHYCPPREPGLDYNQGYDRPRALCLRQPXGQYGE-EEKH 66
            ++  P  Q Q GHYC      H  CPP        Q +   + +CL+ P G Y +  E  
Sbjct: 1357 KQSPPDKQCQPGHYCPEGSGLHRPCPPGS-----YQPFSE-KGICLKCPPGMYCDPNEAR 1410

Query: 65   ESFHCRIV 42
             +F C  V
Sbjct: 1411 VNFSCSSV 1418


>SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 24/92 (26%), Positives = 36/92 (39%)
 Frame = +2

Query: 65  RVFLLRRIGXMAAANRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQP 244
           R ++++  G     NRVH+ D  PD +  Q H        +   S  +   +P+P  S P
Sbjct: 197 RSYVVQVNGRTYRRNRVHLRDTQPDLSAAQDHSAPEPSHDAT-KSSGMSTCSPEPEPSGP 255

Query: 245 SNGPSGNYEPISTGPAFVDFNHPNYPPKRYDN 340
             GP      + T P          PP+R  N
Sbjct: 256 --GPLVATTTVLTEPVVTRSGRVVKPPQRLIN 285


>SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 131 NPDY-NPGQVHVVDNSGVP-SDG-NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFV 298
           NP+Y NPG  + + +     S G  + H  I NP P++        G  +P  TGP  +
Sbjct: 20  NPEYKNPGNKNGIRHPREENSHGIRNSHTRIRNPKPYWKTCHGAIRGIQQPDCTGPEMI 78


>SB_43486| Best HMM Match : RdRP (HMM E-Value=2.4e-27)
          Length = 664

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  GXMAAANRVHVVDHNPDYNPGQVHVV 166
           G   AAN+V V+  NP Y+PG V V+
Sbjct: 399 GDFQAANKVAVI-RNPCYHPGDVRVL 423


>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 116 HVVDHNPDYNPGQVHVVDNSGVPS 187
           +V+D NP ++P ++H+ D  GVPS
Sbjct: 183 NVLDLNPSFHPAEIHLRD-IGVPS 205


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 392 FKIAYLY--ETFTSHHGREGCRI-AWVD 318
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_2837| Best HMM Match : RdRP (HMM E-Value=2.4e-27)
          Length = 525

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  GXMAAANRVHVVDHNPDYNPGQVHVV 166
           G   AAN+V V+  NP Y+PG V V+
Sbjct: 260 GDFQAANKVAVI-RNPCYHPGDVRVL 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,887,822
Number of Sequences: 59808
Number of extensions: 355496
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)