Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A02
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   153   8e-38
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           153   8e-38
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.047
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.047
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    34   0.062
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    29   2.3  
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    29   2.3  
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    29   3.1  
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)            27   7.1  
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)            27   7.1  
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)            27   7.1  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  153 bits (371), Expect = 8e-38
 Identities = 76/142 (53%), Positives = 95/142 (66%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 346
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 347 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 526
            A  LFKIL KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 82  LATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQN 140

Query: 527 KAQLVVIAHDVDPIELVLFLPA 592
           KAQLVVIAHDVDPIELV++LPA
Sbjct: 141 KAQLVVIAHDVDPIELVVWLPA 162


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  153 bits (371), Expect = 8e-38
 Identities = 75/142 (52%), Positives = 95/142 (66%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 346
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 347 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 526
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVTYLIEQN 141

Query: 527 KAQLVVIAHDVDPIELVLFLPA 592
           KAQLVVIAHDVDPIELV++LPA
Sbjct: 142 KAQLVVIAHDVDPIELVVWLPA 163


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 589
           L+ G N  TK + +  ++ VV+A D +P+E++L LP
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLP 70


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 589
           L+ G N  TK + +  ++ VV+A D +P+E++L LP
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLP 70


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 589
           L+ G N  TK + +  ++ +V+A D +P+E++L LP
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLP 70


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPA 592
           G +   KL+EK+ AQLVV+A D +  + V  + A
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKA 80


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPA 592
           G +   KL+EK+ AQLVV+A D +  + V  + A
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKA 80


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 589
           L+ G   V K + + +  L VIA ++ PI+++  LP
Sbjct: 51  LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLP 86


>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPA 592
           G +   KL+EK+ AQL V+A D +  + V  + A
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKA 80


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPA 592
           G +   KL+EK+ AQL V+A D +  + V  + A
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKA 80


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPA 592
           G +   KL+EK+ AQL V+A D +  + V  + A
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKA 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,783,224
Number of Sequences: 28952
Number of extensions: 216623
Number of successful extensions: 548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)