Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A01
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    29   0.74 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.7  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   2.3  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   3.9  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   5.2  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   5.2  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   5.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   6.9  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   6.9  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   9.1  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   9.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   9.1  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   9.1  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 404 YEFVTPLTSLVVVKPNE--TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLP 577
           Y   + +  + +V+ N+  T+  + E  ++PA  +++  S+P Y IS+ R  T+ L SLP
Sbjct: 483 YGHTSTIRCIKIVQGNQSTTDTDDVEKENRPASNDAN--SMPPYIISSSRDCTIRLWSLP 540


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 404 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISN 541
           Y F+T L+  ++++ +E + +    +++P    S    VPVY IS+
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISD 603


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 524 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 420
           +GP+ + I + PV       +H+F L  L+P  SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 284 DAPMGSFHVFLQERGPSVSCQNVSWYIHRLKLHRIQVLE 168
           DAP  + ++ L     S+  + +SWY+  ++LH +Q +E
Sbjct: 200 DAPNSNRNLLLNN---SMLQEKISWYLDTVELHLLQEIE 235


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +2

Query: 398 LKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDI----SNVRPGTVAL 565
           L Y+F+  +T   VV P   +     ++       SSF  V +Y I     +V  G VA+
Sbjct: 134 LVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIFATSKDVSIGPVAV 193

Query: 566 QSLPSPQLTAD 598
            SL + ++ A+
Sbjct: 194 MSLVTSKVIAN 204


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 588 NCGLGSDCRATVPGLTLEISYTGTD 514
           NC    + +    G+TLE++Y  TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 170  ECLALLDYLSYVQQQPVQNQRRKCEI 93
            +C ALL  L + ++  V+NQR K E+
Sbjct: 978  QCAALLSCLVFQEKSEVENQRMKEEL 1003


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 527 YDISNVRPGTVALQSLPSPQL 589
           Y   NVR  ++ LQSLP+P L
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTL 463


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473  ESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPS 580
            E +D P  +E S  S+P+ D+SN   G + +   PS
Sbjct: 941  EDIDVP-LREGSLTSIPIDDVSN--SGDITMGEEPS 973


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 11  QVSSPLLAHVNFVYPSDQVNEETTTKHKFRTFYA 112
           +V S +L  VN  YP  +VN E   KH   T +A
Sbjct: 368 RVISAVLTGVNRAYPFAEVNSEKFDKH-MNTLFA 400


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 559 YGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFI 449
           Y   + V NI +       +LK+  I+ F + CIRFI
Sbjct: 682 YSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFI 718


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +2

Query: 77  TTTKHKFRTFYAGSELVVAGRTINNPTELDTQVLGFCGVLDDGYTRRHFDKKLKVPVPVE 256
           TTTK+  RT YAG E    G+ I  P +   Q       LDD + + H  K L VP P+E
Sbjct: 45  TTTKYVQRTVYAGRE---KGK-IGGPADSWPQ-----RKLDD-FLQNHGVKSLDVP-PIE 93

Query: 257 KHENF 271
               F
Sbjct: 94  TPSQF 98


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -1

Query: 464 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 309
           L+ + ++   P+ S   ++  S+   K SF   FP SC + +    +  P+I
Sbjct: 27  LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 464 VNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 604
           V+   +D P+  E+ F+ + V  + +V     +  + PSP L++  S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPAS 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,038
Number of Sequences: 5004
Number of extensions: 56179
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)