Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A01
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)           28   5.5  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              28   5.5  
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               27   9.6  

>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 630  GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 523
            G   G++W  VS    G G  C  +VP   L I +T
Sbjct: 2663 GSMEGFWWSYVSMTTVGYGDRCPVSVPARILSIGWT 2698


>SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 434 VVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQY 613
           VV + ++    NA  +     +ESSF+ V +  +SN       LQSL  P +      +Y
Sbjct: 175 VVSESHDVPTNNALEIQYEEVKESSFSEVIIRTVSNNIKQCYELQSLTDPFIQDTPINEY 234

Query: 614 QPL 622
            PL
Sbjct: 235 CPL 237


>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
          Length = 441

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 630 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEI 532
           G   G++W  VS    G G  C A+VP   L I
Sbjct: 36  GSMEGFWWSYVSMTTVGYGDRCPASVPARILSI 68


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 TINNPTELDTQVLGFCGVLDDGYTRRHFDKKLKV 241
           +++ P +    VLGF   + D Y  RH D++L +
Sbjct: 610 SVSMPVQSSQVVLGFLPQVTDSYLTRHIDRELNL 643


>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 606 YEVSAVNCGLGSDCRAT 556
           YEV  +NCGLG  C  T
Sbjct: 446 YEVQWINCGLGESCEPT 462


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 413 VTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQS-LPSP 583
           V+P TS++V + +  ++++ E  D P + +   +S P +D     P   ++ S +PSP
Sbjct: 789 VSPRTSVIVEESDAESSIDEEDEDAPEYIDQVSSSPPQHD---YMPTQASVSSPVPSP 843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,538,068
Number of Sequences: 59808
Number of extensions: 404741
Number of successful extensions: 1115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)