Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_A01
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58340.1 68414.m06636 MATE efflux protein-related contains Pf...    32   0.28 
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    31   0.48 
At3g51550.1 68416.m05645 protein kinase family protein contains ...    31   0.48 
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    30   1.1  
At5g19700.1 68418.m02343 MATE efflux protein-related contains Pf...    29   1.9  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    28   4.5  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    28   4.5  
At2g38510.1 68415.m04732 MATE efflux protein-related contains Pf...    28   5.9  
At5g56840.1 68418.m07092 DNA-binding family protein contains Pfa...    27   7.8  
At2g47750.1 68415.m05961 auxin-responsive GH3 family protein sim...    27   7.8  
At2g42860.1 68415.m05307 expressed protein                             27   7.8  

>At1g58340.1 68414.m06636 MATE efflux protein-related contains Pfam
           profile: PF01554 uncharacterized membrane protein family
           UPF0013
          Length = 532

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 615 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 523
           W+WYE   + CGL ++ RATV  + + I  T
Sbjct: 298 WWWYEFMIILCGLLANPRATVASMGILIQTT 328


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 615 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 523
           W+WYE+  V CGL  + R+TV  + + I  T
Sbjct: 296 WWWYEIMIVLCGLLVNPRSTVAAMGVLIQTT 326


>At3g51550.1 68416.m05645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 895

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 461 AVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQP 619
           A++   V+KP + +S    V ++ ++           +P PQ+TAD S   +P
Sbjct: 385 ALHPNPVNKPEYYDSLLNGVEIFKMNTSDGNLAGTNPIPGPQVTADPSKVLRP 437


>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 615 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 523
           W+WYE+  + CGL  + +ATV  + + I  T
Sbjct: 273 WWWYEIMILLCGLLLNPQATVASMGILIQTT 303


>At5g19700.1 68418.m02343 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 508

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 630 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 523
           G+   W+WYE+  V CGL  D    V  + + I  T
Sbjct: 271 GVCLEWWWYEIMTVLCGLLIDPSTPVASMGILIQTT 306


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 518 PMQTKILEKP--VYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLR 345
           P + K L KP  +Y  + R++   H+V +  K   +  + +    LKL   D +P   L 
Sbjct: 499 PSEQKFLWKPEEIYDVLARNIFLKHVVDITSKLQLISDVSSITHGLKLLHWDAYPLETLP 558

Query: 344 REYQ 333
             +Q
Sbjct: 559 FSFQ 562


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/41 (46%), Positives = 19/41 (46%)
 Frame = -3

Query: 279 SNGKFSCFSTGTGTFSFLSKCLLVYPSSKTPQNPST*VSSS 157
           SN   S FS  TG FSFL        SS TP  P    SSS
Sbjct: 322 SNASASPFSASTG-FSFLKSTASSTTSSTTPSAPPQTASSS 361


>At2g38510.1 68415.m04732 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 615 WYWYEVSAVNCGLGSDCRATVPGLTLEISYTG 520
           ++WYE+    CGL  + +A+V  + + I  TG
Sbjct: 247 YWWYEIMLFLCGLLGNPKASVAAMGILIQTTG 278


>At5g56840.1 68418.m07092 DNA-binding family protein contains Pfam
           domains, PF00249: Myb-like DNA-binding domain and
           PF00098: Zinc knuckle
          Length = 233

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 182 FCGVLDDGYTRRHFDKKLKVPVPVEKHENF 271
           F G L DG   +  D+K  VP   E+H  F
Sbjct: 72  FAGYLSDGLAHKTPDRKKGVPWTAEEHRTF 101


>At2g47750.1 68415.m05961 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 585

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 260 VFLQERGPSVSCQNVSWYIHRLKLHRIQVLECLALLDYLSYVQQQ 126
           +  ++   S+ CQ ++  IHR K+ R+  +   A L  +SY++++
Sbjct: 188 ILCEDSNQSMYCQLLAGLIHRHKVMRLGAVFASAFLRAISYLEKK 232


>At2g42860.1 68415.m05307 expressed protein
          Length = 224

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +2

Query: 50  YPSDQVNEETTTKHKFRTFYAGSELVVAGRTINNPTELDTQVLGFCGVLDDGYTRRHFDK 229
           +  D   E   T   F +    +E ++ G   ++ ++ DT+       LD   +R +FD 
Sbjct: 109 FQEDTSAETEQTNEMFHSLNDSNE-ILEGTKSSSASDEDTEDSSSNSDLDSSLSRYYFDG 167

Query: 230 KLKVPVPVEKHENFPLERL 286
            L V   VE+ E    E L
Sbjct: 168 SLPVSAHVEEFETHQDESL 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,072
Number of Sequences: 28952
Number of extensions: 280604
Number of successful extensions: 766
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)