Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P24
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M...    26   0.78 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    23   7.2  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    23   9.6  

>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 32  LSTEVHGFVEFRFETGVFKDAATLT 106
           LST   G   FRFETG + D+  +T
Sbjct: 65  LSTVESGIYTFRFETGAYFDSLGVT 89


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 51  VSLNFASKRASLKMRQL*LFKKK*PQNRN 137
           + +NFA   + LKM QL ++  +  +N N
Sbjct: 743 IQVNFAPSESDLKMEQLKMYLARLLRNYN 771


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 71  RSEIQRNRVLPYSECDVINIID 6
           + +I  N++LPY   +V+ I+D
Sbjct: 75  QEKISNNKMLPYLVGNVVEILD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,143
Number of Sequences: 5004
Number of extensions: 13283
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)