Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P24
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0402 - 18627565-18628137,18628343-18628479,18628513-186286...    29   0.51 
03_02_0344 - 7654551-7656149                                           28   1.2  
02_02_0237 - 8150491-8151066                                           25   6.3  
01_02_0130 - 11424904-11425142,11425295-11425416,11425461-114255...    25   8.3  

>02_03_0402 -
           18627565-18628137,18628343-18628479,18628513-18628603,
           18629734-18629817
          Length = 294

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 264 INRCNYSVVMLVLDIK-IILEENVCERRTHAPLVCI 160
           +N  N  V++ +++I  I+LE N CE  T+  +VC+
Sbjct: 56  LNTVNRDVLVDIVNISNIVLERNECEIETNLTVVCV 91


>03_02_0344 - 7654551-7656149
          Length = 532

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +2

Query: 23  RHTLSTEVHGFVEFRFETGVFKDAATLTV*KKITSKSKL 139
           +H +S E  GF+E    TG F DAA L    KIT++S L
Sbjct: 131 QHKISKE--GFLEMTESTGCFNDAA-LDFQTKITNRSAL 166


>02_02_0237 - 8150491-8151066
          Length = 191

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 124 GYFFLNSQSCRIFKDARFEAKFNETVYFR 38
           GY  + SQSCR+ K   F   +  T + R
Sbjct: 155 GYPDVRSQSCRVIKPTAFARNYPLTTFSR 183


>01_02_0130 -
           11424904-11425142,11425295-11425416,11425461-11425546,
           11425642-11425858,11426788-11426832,11428385-11428593,
           11428706-11428936
          Length = 382

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 26  HTLSTEVHGFVEFRFETGVFKDAATLTV*KKIT 124
           H+LST   G +    ET VF D+    V  K+T
Sbjct: 296 HSLSTPAEGTLSGHPETNVFHDSKIYDVPGKVT 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,286,124
Number of Sequences: 37544
Number of extensions: 68291
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)