Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P24
         (266 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.59 
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)                    25   7.3  
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)                 25   9.6  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_35227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 109 NSQSCRIFKDARFEAKFNETVY 44
           NS+S ++ KDA F+ +FNE ++
Sbjct: 28  NSKSFKVIKDATFDPRFNEEIH 49


>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 736

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +2

Query: 26  HTLSTEVHGFVEFRFETGVFKDAATLTV*KKITSKSKLNYFI*KYIQTRGACVRLSQTF 202
           ++LS + HGF      T   K AAT+T     T  SK+     K       C RL   F
Sbjct: 656 YSLSGDEHGFFRLDPVTTSAKQAATITT----TQYSKITSLFDKKATELSVCERLRSIF 710


>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 77  GVFKDAATLTV*KKITSKSKLNYFI*KYIQTRGACVRLSQTFSSRIILISNTNMTTL 247
           G FKDAAT      +  ++ +N+F  K I +  A   LS     +++ +   N  TL
Sbjct: 384 GEFKDAATRLANSLVNVRAIINHFTPK-IDSWAAVNHLSALSEEQVLEVIRGNYDTL 439


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 87 LKTPVSKRNSTKP 49
          +KTP+S+R STKP
Sbjct: 58 IKTPLSRRESTKP 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,789,356
Number of Sequences: 59808
Number of extensions: 103495
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 16,821,457
effective HSP length: 65
effective length of database: 12,933,937
effective search space used: 297480551
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)