Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P24
         (266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical...    25   5.6  
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81562-1|CAB04560.2|  367|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    25   9.7  
AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    25   9.7  

>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 173 GACVRLSQTFSSRIILISNTNMTT 244
           G+CVRL Q+  SR+++ S+   T+
Sbjct: 251 GSCVRLEQSNKSRLLVASDVTPTS 274


>AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical
           protein F54D12.2 protein.
          Length = 124

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 125 SKSKLNYFI*KYIQTRGACVR-LSQTFSSRIILISNTN 235
           SKS LNY   KY+  + +C++  +  F+S  +   +T+
Sbjct: 67  SKSLLNYIAVKYVYDKVSCLKNFASLFTSSTLYTQSTD 104


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
          protein F08D12.7 protein.
          Length = 336

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 81 TPVSKRNSTKPCTS 40
          +PVS +NST+PC S
Sbjct: 17 SPVSSQNSTEPCDS 30


>Z81562-1|CAB04560.2|  367|Caenorhabditis elegans Hypothetical
           protein K03D7.2 protein.
          Length = 367

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 241 RHVGIRY*DNSRRECLRKAHARSSCLYIFLYEVV*FRF*GYFFLNSQSCR 92
           R + +RY  N R  CL +A      + +    ++ F    YF LNS S R
Sbjct: 141 RTLVMRYPVNGRINCLTQAKYGFRIVVLITLLIIPFGAPSYFKLNSTSVR 190


>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
           protein 5 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 119 ITSKSKLNYFI*KYIQTRGACVRLSQTFSSRIILISNTNM 238
           I  +S ++Y +  Y +T G C+R + TF+ R   I    M
Sbjct: 147 IDERSVMHYELGFYDKTDGGCIRGTLTFALRYDFIHRVLM 186


>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 HARSSCLYIFLYEVV*FRF*GYFFLN 107
           HA  S +YIFL  +  F F GY   N
Sbjct: 197 HATISVVYIFLVLIESFIFVGYLIFN 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,064,081
Number of Sequences: 27780
Number of extensions: 74421
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)