Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P24
         (266 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ...    25   6.9  
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    25   9.1  

>At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 639

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 121 YFFLNSQSCRIFKDARFEAKFNETVY 44
           Y FL   + R+  D  F + FNET+Y
Sbjct: 557 YIFLIMATRRLEADRFFTSDFNETIY 582


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 68  SEIQRNRVLPYSECDVINIIDK 3
           S++++ RVL   +CD+I+ IDK
Sbjct: 465 SKLKKLRVLVIRDCDLIDNIDK 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,527,114
Number of Sequences: 28952
Number of extensions: 61158
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)