Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P23
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.14 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   2.3  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   3.0  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   5.2  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   6.9  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   6.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   9.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   9.1  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 101 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 208
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +2

Query: 161  FFSQPSNGP----SGNYEPISTGPAFGRF 235
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 197 YEPISTGPAFGRFQIIXNYPXPSDT 271
           Y+P ++G  +  +Q + NY  P +T
Sbjct: 147 YQPFNSGKYYHNWQFVQNYDDPHET 171


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 258 TQAIRNNPLAPWWGS*MSHKDTFN*NDISYIPLLYHH 368
           ++ +  N   P+WG  M ++   + +  S I  L HH
Sbjct: 812 SKVVHENGFRPFWGETMVYESIISDDFYSMIRFLVHH 848


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 125 CRPMEHHYCPPRELCLRQP 69
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +1

Query: 223 VRSISNHPQLSXPKRYETTLSPRGGEVKCLIKIHLTEMI 339
           V+ ++++P    PKRY   LS      + ++   L  ++
Sbjct: 32  VKELNSNPTSGAPKRYRVVLSDSINYAQSMLSTQLNHLV 70


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 116  SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 226
            SD   DH V  +  P F   S+ P  + E  S  P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 156 SGFAITTWSLLPSDGTPLL 100
           S F +  W++LP  G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,337
Number of Sequences: 5004
Number of extensions: 33634
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)