Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P23
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0216 + 15804110-15804284,15804341-15804351 30 0.96
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864... 30 0.96
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 29 1.3
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 28 2.9
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 28 2.9
03_02_1005 - 13136999-13137467,13137871-13138050,13138422-131385... 27 5.1
12_02_0219 + 15822050-15824896 27 6.8
02_02_0552 + 11426761-11428815 27 6.8
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 9.0
07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44... 27 9.0
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 9.0
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 0.96
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 104 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 226
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>06_03_0795 -
24683023-24683155,24685853-24686057,24686275-24686443,
24686590-24686775,24686916-24687124,24687197-24687362
Length = 355
Score = 29.9 bits (64), Expect = 0.96
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 131 HYCRPMEHHYCPPRELCLRQPW 66
HYCR +E+ YC + L R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 190 RKL*THKHWTGVRSISNHPQLSXPKRYETTLSPRGGEVKCLIKIHLTEMIYHIFHYYITT 369
RKL H H TG+ + + LS RY T L + GE++ L + + E + ITT
Sbjct: 331 RKLQNH-HLTGIEMLLHLKYLSLGSRYITELPKKLGELRYLETLDIRETMIKSLPSAITT 389
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -3
Query: 299 SPPRGERVVSYRLGXDNXG*FEIDRTPVQCLWVH--NFR*DRLMVERRKDPGSQ*QRGHY 126
+P ER ++R G N F + +TPV V ++ D E+R D G + GHY
Sbjct: 1220 APSWFERYGNHRNG-QNLSMFNLQKTPVPPYNVQKPSWNMDNNSAEQRIDSGQSVKPGHY 1278
Query: 125 CRPMEHHYCPPRELCLRQP 69
+ P + R+P
Sbjct: 1279 ISSKKMEVSVPSSIMQRRP 1297
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.3 bits (60), Expect = 2.9
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 104 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPISTGPAFGRFQIIXNYPX-PSDTK 274
SG PS GN+ + ++P PF S PS+G SGNY + T + I + P S +
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPTAQILPQAVPINSSPSGSSGNR 521
Query: 275 QPSRPVVGKL 304
P VV K+
Sbjct: 522 VPVDDVVEKV 531
>03_02_1005 -
13136999-13137467,13137871-13138050,13138422-13138551,
13138651-13138738,13139316-13139660
Length = 403
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 208 KHWTGV-RSISNHPQLSXPKRYETTLS---PRGGEVKCLIKIHLTEMIYHIF 351
+ W G+ + I P+ S + +L PR G +KC I+ + T Y+++
Sbjct: 88 RSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLY 139
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 6 DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 110
D D +R+ ++ C F+ P WPWL ++ T+V+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303
>02_02_0552 + 11426761-11428815
Length = 684
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +1
Query: 220 GVRSISNHPQLSXPKRYETTLSPRGGEVKCLIKIHLTEMIYHI 348
G + H P R+E SP GGE K ++ ++ I
Sbjct: 69 GKPQVKGHAFHPTPLRFEELSSPEGGEKKAAVRSFSASFVFGI 111
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 92 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 184
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>07_01_0059 -
439518-439646,439767-439885,440003-440241,440320-440376,
440480-440566,440664-441208,441967-442026,443552-443935,
444049-444114
Length = 561
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -2
Query: 387 LWVGEVCGDIIMEYMIYHFS*MYLYETFNFPTTGREGCFV 268
LW+G++CG ++ ++ + +E G+E FV
Sbjct: 521 LWLGQICGLLLQNAVLLFITLRTKWERLELTMNGKEDGFV 560
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 92 VVDNSGVPSDGNSDHVVIANPDPFFSQP 175
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,388
Number of Sequences: 37544
Number of extensions: 239275
Number of successful extensions: 549
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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