Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P23
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_5301| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_44915| Best HMM Match : VWA (HMM E-Value=0) 27 7.0
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 27 7.0
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 27 7.0
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_57784| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082) 27 9.2
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 27 9.2
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3) 27 9.2
SB_56365| Best HMM Match : SDH_beta (HMM E-Value=7.6) 27 9.2
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 322 HLTEMIYHIFHYYITTHLPHPQTRXM-HLYKY 414
+LT M + H+Y+TT L HP T HL+++
Sbjct: 105 YLTTMFVIMSHHYLTTFLRHPVTPLPDHLFRH 136
>SB_5301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 272 SYRLGXDNXG*FEIDRTPVQCLWVH-NFR 189
+YR+G + G F+ D + + CL VH NF+
Sbjct: 253 AYRIGEEIVGSFDFDDSLISCLKVHTNFK 281
>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
Length = 541
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 140 VIANPDPFFSQP-SNGPSGNYEPISTG 217
VIA PDP S+P +NG G PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 140 VIANPDPFFSQP-SNGPSGNYEPISTG 217
VIA PDP S+P +NG G PIS+G
Sbjct: 54 VIAEPDPCLSKPCANG--GTCSPISSG 78
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 140 VIANPDPFFSQP-SNGPSGNYEPISTG 217
VIA PDP S+P +NG G PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 194 NYEPISTGPAFGRFQIIXNYPXPSDTKQPSRPVVG 298
N+EP+ G + R +I NY PS +++ + + G
Sbjct: 14 NHEPMENGTSDERTNLIINYVPPSMSQEDIKKIFG 48
>SB_57784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 208 KHWTGVRSISNHPQLSXPKRYETTLSP 288
+HW+G SI+ PQ S K YE T P
Sbjct: 165 EHWSGPDSITVEPQQS--KNYELTYRP 189
>SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)
Length = 279
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 208 KHWTGVRSISNHPQLSXPKRYETT 279
KH T ++ +N P + P +Y+TT
Sbjct: 52 KHQTASKAPNNQPSIKQPAKYQTT 75
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 95 VDNSGVPSDGNSDHVVIANPDPFFSQ 172
VD+SGV D S +V A +P FSQ
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ 186
>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 173
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 124 AVRWNTTIVHHVNSVCGSHGQY 59
A RW T H+ +CG HG+Y
Sbjct: 55 ATRWTTN--HNCYHICGHHGRY 74
>SB_56365| Best HMM Match : SDH_beta (HMM E-Value=7.6)
Length = 331
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 208 KHWTGVRSISNHPQLSXPKRYETTLSP 288
+HW+G SI+ PQ S K YE T P
Sbjct: 296 EHWSGPDSITVEPQQS--KNYELTYRP 320
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 95 VDNSGVPSDGNSDHVVIANPDPFFSQ 172
VD+SGV D S +V A +P FSQ
Sbjct: 90 VDSSGVAGDQRSSLLVSATLNPLFSQ 115
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 134 GHYCRPMEHHYCPPRELCLR 75
GH C+P CPP C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,186
Number of Sequences: 59808
Number of extensions: 280840
Number of successful extensions: 724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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