Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P23
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   2.7  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   6.1  
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   8.1  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 140 VIANPDPFFSQPSNGPSGNYEPISTGPAF 226
           V A P P F+ P+  P     PI  GPAF
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAF 138


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 98  DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFG 229
           D SG P  G          DP  +QPS GP G + P    P+ G
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNPSGAPPSGG 330



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 98  DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFG 229
           D SG P  G          DP  + PS GP G ++P    P+ G
Sbjct: 366 DPSGAPPSGGPPGPF----DPSGAPPSGGPPGPFDPSGAPPSGG 405


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 140 VIANPDPFFSQPSNGPSGNYEPISTGPAF 226
           V A P P F+ P+  P     P+  GPAF
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAF 151


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 152  PDPFFSQPSNGPSGNYEPISTGPAFGRFQIIXNYPXPSDTKQPSRP 289
            P P    P NGP+G  +P   GP+        N P P+    P +P
Sbjct: 958  PSPNGPSP-NGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKP 1002


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +2

Query: 170 QPSN-GPSGNYEPISTGPAFGRFQII-----XNYPXPSDTKQPSRPV 292
           +P+N GP    + + T P     Q +      N P P++T+QPSRPV
Sbjct: 271 RPNNHGPGYPEDQVPTAPPVPGQQRVPPTQTRNPPNPTNTRQPSRPV 317


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 128 YCRPMEHHYCPPRELCLRQPWP 63
           +C P+++ Y  P  + L  PWP
Sbjct: 282 HCSPLQYPYSNPYSILLDAPWP 303


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 149 NPDPFFSQPSNGPSGNYEPISTGPAFGRFQIIXNYPXPSDTKQPSRPVVG 298
           NPD F  +         + IS+G A      + + P P D K P + VVG
Sbjct: 460 NPDEFDGELDENLEAFMKQISSGKAKAH---VKSAPAPKDDKGPVKTVVG 506


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 152 PDPFFSQPSNGPSGNYEPIS 211
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 152 PDPFFSQPSNGPSGNYEPIS 211
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,863,446
Number of Sequences: 27780
Number of extensions: 203607
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)