Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P23
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.16 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 244 PQLSXPKRYET--TLSPRGGEVKCL-IKIHLTEMI-YHIFHYYITTHL 375
           PQL     Y T  T+    G   C+ I  +L   + YH+FH YI + L
Sbjct: 179 PQLDISNNYTTDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSAL 226


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 51  SSPYWPWLPQTEFTWWTIVVFHRTAIV 131
           S+P W + P   FTW  I V    A+V
Sbjct: 549 SAPVWRFQPWGPFTWGGIGVVVLFAVV 575


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 1   RQTTLTLFDNESFRVFLLRRIGHGCRKQSSR 93
           RQ    L  +ESFR    R     CRK+  +
Sbjct: 427 RQFLYCLAGDESFRKRRQREAAGNCRKRGEK 457


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 338 IISVKCIFMRHLTSPPRGERVVSYRLGXDNXG*FEIDRTPVQCL 207
           I+     FMR   +P      V+ ++  D+     IDRTP++ +
Sbjct: 281 IVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLPFIDRTPIEII 324


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 338 IISVKCIFMRHLTSPPRGERVVSYRLGXDNXG*FEIDRTPVQCL 207
           I+     FMR   +P      V+ ++  D+     IDRTP++ +
Sbjct: 281 IVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLPFIDRTPIEII 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,482
Number of Sequences: 438
Number of extensions: 2896
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)