Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P23
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    28   3.3  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    27   4.3  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.3  
At1g43640.1 68414.m05010 F-box family protein / tubby family pro...    27   5.7  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   5.7  

>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +2

Query: 104 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFGRFQIIXNYPXPSDTKQPS 283
           SG  SD     +       F    ++G SG Y P   GP      ++ + P P   ++P 
Sbjct: 4   SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGP------VVVSVPFPFKKEKPQ 57

Query: 284 RPVVGK 301
              VG+
Sbjct: 58  SVTVGE 63


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 80  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFGRFQ 238
           N+ +   +SG+ +   S    +   DPFFS  S+G          G AF   Q
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAFSEAQ 154


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  SDTIRQ*KLSCFSSSPYWPWLP 77
           S  I + + SC  SSP+ PW+P
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVP 117


>At1g43640.1 68414.m05010 F-box family protein / tubby family
           protein contains Pfam profile: PF01167: Tub family;
           contains Pfam PF00646: F-box domain; similar to Chain A,
           C-Terminal Domain Of Mouse Brain Tubby Protein
           Length(GI:6730158) [Mus musculus]; similar to Tubby
           related protein 1 (Tubby-like protein 1)
           (Swiss-Prot:O00294) [Homo sapiens]; similar to
           phosphodiesterase (GI:467578) [Mus musculus]
          Length = 429

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 226 RSISNHPQLSXPKRYETTLS---PRGGEVKCLIKIHLTEMIYHIF 351
           + I   P+ S    +  +L    PR G ++C IK   + M YH++
Sbjct: 98  KDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLY 142


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 118 RWNTTIVHHVNSVCGSHGQYGEEEKH 41
           +W   I HH     G HG   E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,409
Number of Sequences: 28952
Number of extensions: 185931
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)