Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P21
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 40 0.002
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 33 0.12
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 31 0.48
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 31 0.64
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 2.0
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685... 29 2.6
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 29 3.4
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 28 6.0
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563... 27 7.9
01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341 27 7.9
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = +1
Query: 226 VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLL--RGNL 399
VG++G+G +G A L A+ G V L D ++ A+ I L+ L G L
Sbjct: 13 VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72
Query: 400 NADEQFQCVKGTCDLAIAGXGFQFP*QDCVPENLELKTTVFQNLDNVVHYNTILS 564
++ EQ +CV +L A + + E+ ++K +F LD + + IL+
Sbjct: 73 HSIEQIKCVSSVQELRDADLVI-----EAIVESEDIKKKLFVELDKITKPSAILA 122
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 344 SAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 207
S + S+I ST + ++W N ++ DLP+ T P S LNL
Sbjct: 355 SFVGSLILPSTVNQNLSWLDASYNRLSGDLPVDINITFPNLSYLNL 400
>07_01_0935 +
7905748-7905765,7906071-7906096,7906142-7906166,
7906891-7907700,7907803-7907934,7908102-7908470,
7908540-7908671,7909135-7909662
Length = 679
Score = 31.5 bits (68), Expect = 0.48
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -1
Query: 506 SSKFSGTQSCYGNWNPXPAIAK-SQVPFTHWNCSSAFRFP-LRSPSFSKVFNCTLISAIA 333
+S FSG + W+ +A Q+P + W+ P R FS ++ I
Sbjct: 432 TSTFSGRVTATA-WSSTSDLALLRQIPLSVWSSYDYCLLPDQRCSDFSHYLYFNVVGLIT 490
Query: 332 SVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFS 219
C T+ ++W+ + N + D PT TFS
Sbjct: 491 RHDCERTSGYAISWWSSYGNCLVLDKRCGVPPTTSTFS 528
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -3
Query: 327 NLLLNNIEQSYLVSD*SEQHSP*SPDQSTPNNSNFFRFKLGSHDDTQRL*RPAHY*RMK* 148
N+ L N+ + +L SD + + +NSN FR+ GS DDT + ++ R
Sbjct: 761 NMSLRNLAEKFLTSDPDKMMI--LKENGFSSNSNSFRYSGGSRDDTSPVASTSNESRYMG 818
Query: 147 FRVKQFLKPS 118
RV KP+
Sbjct: 819 ERVDTLRKPA 828
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 223 KVGIVGSGLIGRSWAMLFASVGYQ-VTLFD 309
++GIVG+G G S A A +GY+ VTLF+
Sbjct: 23 RIGIVGAGPSGLSAAYALAKLGYRNVTLFE 52
>05_02_0125 -
6852470-6852481,6852641-6853086,6853178-6853781,
6853970-6854187,6854283-6854437,6854561-6854772
Length = 548
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 251 ISPLPTIPTFSDLNLEAMTTRSVCNG 174
++ LP +PT LN+ T S+CNG
Sbjct: 234 VTCLPILPTLRCLNMSNCTIHSICNG 259
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 449 IAKSQVPFTHWNCSSAFRFPLRSPSFSKVFN 357
+A S++ HW+ A FP+ PS+ K++N
Sbjct: 191 MAYSKLNVLHWHIVDAQSFPIEIPSYPKLWN 221
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 419 WNCSSAFRFPLRSPSFSKVFNCTLISAIASVICFSTTSN 303
+ CSS R P R PS+S + ++ S CF+TTS+
Sbjct: 586 YTCSSVIRTPRRVPSWSCISRENSTGSL-SEDCFATTSS 623
>04_04_0579 -
26355431-26355684,26355988-26356073,26356292-26356377,
26356596-26356788,26356895-26357094,26359257-26359379
Length = 313
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 428 FTHWNCSSAF-RFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTWYP 285
F ++ C S + R PL + +N +S ++S+ ++ V WYP
Sbjct: 155 FQYFECDSPYERMPLADKVYELCYNFPPLSYLSSIELSPSSWMSVFWYP 203
>01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341
Length = 637
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 365 VFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLP 237
+ NC S I S IC + ++ W + N+ + P PLP
Sbjct: 42 ILNCKSDSLIPSYICSVISKSRWGWASDDPNDDEYTPPDHPLP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,411
Number of Sequences: 37544
Number of extensions: 283185
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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