Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P21
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    40   0.002
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    31   0.41 
At1g55980.1 68414.m06421 expressed protein                             31   0.41 
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi...    30   0.94 
At1g50080.1 68414.m05618 hypothetical protein                          28   3.8  
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    27   8.7  
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ...    27   8.7  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = +1

Query: 220 EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 399
           + VG+VG+G +G   A L A+ G  V L D     ++ A A I   +K     GL+   +
Sbjct: 5   KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64

Query: 400 NAD--EQFQCVKGTCDLAIAGXGFQFP*QDCVPENLELKTTVFQNLDNVVHYNTILS 564
             D   + +      DL  A         + + E+ ++K  +F++LD +   + IL+
Sbjct: 65  GDDAMHRLRLTSNLEDLCSADIIV-----EAIVESEDIKKKLFKDLDGIAKSSAILA 116


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 187 LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 309
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 10  IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 187 LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 309
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 148 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188


>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 334

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 223 KVGIVGSGLIGRSWAMLFASVGYQVTLFD 309
           K+G +G+G++GRS        GY VT+F+
Sbjct: 39  KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67


>At1g50080.1 68414.m05618 hypothetical protein
          Length = 91

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 362 FNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMTT 192
           FNC L+   AS I      + +     + NN+ H+    P PTI    D  +  + T
Sbjct: 18  FNCVLLCMFASFIRKLAAQSTIYNLWKQRNNVVHNQVSIPAPTIFKLIDREIRNIIT 74


>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 196 RHAAFVTAGTLLTNEIISSQAVLKTVYKLVIYIFTRL 86
           RH   + A  +L  E++ + A L     LV+Y+ T++
Sbjct: 56  RHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTKM 92


>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
           family protein / leafy cotyledon 1-related (L1L)
           supporting cDNA gi|27372446|gb|AY138461.1|; contains
           Pfam PF00808 : Histone-like transcription factor
           (CBF/NF-Y) and archaeal histone; contains similarity to
           CCAAT-binding transcription factor subunit A (CBF-A)
           (NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
           protein subunit B) (Swiss-Prot:P25209) [Zea mays]
          Length = 234

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -1

Query: 494 SGTQSCYGNWNPXPAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFNCTLISAIASVICFS 315
           +GT + YG + P P I  +Q  + H N    F F    P+ SK+   +  ++ A V  F 
Sbjct: 173 NGTMTEYGAYGPVPGIHMAQYHYRHQN---GFVFSGNEPN-SKMSGSSSGASGARVEVFP 228

Query: 314 TTSNK 300
           T  +K
Sbjct: 229 TQQHK 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,048,491
Number of Sequences: 28952
Number of extensions: 241714
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)