Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P19
(380 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.24
SB_40585| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_31425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45) 27 5.2
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 5.2
SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5) 27 6.8
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_56070| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 26 9.0
SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 26 9.0
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 26 9.0
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 225 PCVPTSGSTNGTTSARREPSPAGFK 299
PCV TNGTT+A P PAG K
Sbjct: 859 PCVKGHYCTNGTTTATEHPCPAGGK 883
>SB_40585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 145 LFRLPSMPEGPRQEVRPVLLFPAGLQVHVSQRVGRQMGQPARGGNLRRQDL 297
LF S P+ P + P +G+ + Q G Q G P+ NL RQDL
Sbjct: 2 LFSKASTPQTPGTPMSPDSSKLSGVDGDIKQAFGDQAGSPSLTRNL-RQDL 51
>SB_31425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 145 LFRLPSMPEGPRQEVRPVLLFPAGLQVHVSQRVGRQMGQPARGGNLRRQDL 297
LF S P+ P + P +G+ + Q G Q G P+ NL RQDL
Sbjct: 2 LFSKASTPQTPGTPMSPDSSKLSGVDGDIKQAFGDQAGSPSLTRNL-RQDL 51
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 275 PPRAGCPICRPTRWDTWTCRPAGNSSTGRTS 183
PPR P R RW C + +SS+ TS
Sbjct: 2787 PPRRRKPTARSIRWKELHCNTSSSSSSQNTS 2817
>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
Length = 936
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 110 PNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKS 226
PN N T +YL F +K GK +YF R + S
Sbjct: 437 PNLNNTNGLLVAYLSFRHMEKKDGKLNLFQFYFHRFWSS 475
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 KTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYD--PCYYFQRVYKSMCPNEWVDK 253
+TAP P+ P + + C SY+ F +K ++ P + K C E+V K
Sbjct: 3294 RTAPVSPQTPIEYKCNKCRNSYVSFSEMKKHMSTVHNCRPSKTCELCGKMFCTPEYVAK 3352
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 KTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYD--PCYYFQRVYKSMCPNEWVDK 253
+TAP P+ P + + C SY+ F +K ++ P + K C E+V K
Sbjct: 3504 ETAPVSPQTPIEYKCNKCRNSYVSFSEMKKHMSTVHNSRPSKTCELCSKIFCRPEYVAK 3562
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 KTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYD--PCYYFQRVYKSMCPNEWVDK 253
+TAP P+ P + + C SY+ F +K + P + K C E+V K
Sbjct: 3714 RTAPVSPQTPIEYKCNKCSNSYVSFSEMKKHMSTVHHCRPSKTCELCSKMFCRPEYVAK 3772
>SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 543
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 137 YQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWDNQRAEGTF 283
Y SY+ F K +GKK +RV + P DN+ A+ TF
Sbjct: 431 YPSYVVFENLPKYKGKKLKSA---ERVKRCDSPKPSPSSSDNEDADATF 476
>SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5)
Length = 374
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 296 KSCRRRFPPRAGCPICRPTRWDTWTCRPAGNSSTGR 189
KS R+R+ P C +C PT+ ++ P N+ R
Sbjct: 36 KSMRKRWKP-CPCLVCEPTQTRSYVYGPEDNAHANR 70
>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Frame = -1
Query: 272 PRAGCPICRP-------TRWDTWTCRPAGNSSTGR 189
PR G P+ P T+ +TW CRP G + G+
Sbjct: 35 PRKGSPLPVPYRICGIGTQSETWLCRPCGANRVGQ 69
>SB_56070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 275 PPRAGCPICR-PTRWDTWTCRPAGNSSTGRTSC 180
PP+A P+C T+ +T CRP G + G+ C
Sbjct: 72 PPKA--PVCGIGTQSETRLCRPCGANRKGQRMC 102
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 26.2 bits (55), Expect = 9.0
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = +2
Query: 197 CYYFQRVYKSMCPNEWVDKWDNQR 268
C Y+++ + + N W++ W Q+
Sbjct: 443 CLYYEQSNRELWDNSWIEGWKRQK 466
>SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 351
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 152 DFHRCQKVRGKKYDPCYYFQRVYKSMCP 235
++ R Q+ +GK+YD C Y CP
Sbjct: 205 NYRRKQRGQGKQYDNCGYQHMANPESCP 232
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 152 DFHRCQKVRGKKYDPCYYFQRVYKSMCP 235
++ R Q+ +GK+YD C Y CP
Sbjct: 205 NYRRKQRGQGKQYDNCGYQHMANPESCP 232
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 41 LSKMPEMIKSAADIKTAPFDPRFPNQNQTRYCYQSYLD 154
L +PE ++ A KT PF PR + ++ + QS ++
Sbjct: 212 LESLPEKVRIAL-AKTVPFPPRLGHPDEYAHLVQSVME 248
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 26.2 bits (55), Expect = 9.0
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 FHWIEFEEKALFTLSKMPEMIKSAADIKTAPFDPRFPNQNQTRYCYQSYLD--FHRCQKV 175
FHW E EEKA ++ E I S + A F+PR P +T Y L ++ +
Sbjct: 814 FHWGEREEKA---FQEIKESISS--ETTMAYFNPRRPIILRTEASYHQGLSAALYQLYQQ 868
Query: 176 RGKKYDPCYYFQR 214
K P ++ R
Sbjct: 869 TDKGMQPVHFISR 881
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,661,095
Number of Sequences: 59808
Number of extensions: 246110
Number of successful extensions: 670
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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