Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P19
(380 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati... 98 2e-21
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 91 2e-19
At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putati... 90 4e-19
At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family... 50 7e-07
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf... 29 1.4
At1g56710.1 68414.m06522 glycoside hydrolase family 28 protein /... 29 1.4
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR... 28 1.8
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 27 3.2
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 27 4.2
At1g25570.1 68414.m03174 leucine-rich repeat protein-related co... 27 4.2
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf... 27 5.6
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 27 5.6
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 27 5.6
At5g24020.1 68418.m02822 septum site-determining protein (MIND) ... 27 5.6
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot... 26 9.7
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 26 9.7
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 26 9.7
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 26 9.7
>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 78
Score = 97.9 bits (233), Expect = 2e-21
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = +2
Query: 77 DIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKW 256
++KTAP D RFP NQTR+C+ Y++FHRC +G++ + C F + Y+++CP EWVDKW
Sbjct: 6 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKW 65
Query: 257 DNQRAEGTFAG 289
+ QR GTF G
Sbjct: 66 NEQRESGTFPG 76
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 91.1 bits (216), Expect = 2e-19
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +2
Query: 80 IKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWD 259
++TAP D RFP NQTR+C+ Y+++HRC +G C F + Y+S+CP+EWVD+W+
Sbjct: 119 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 178
Query: 260 NQRAEGTFAG 289
QR GTF G
Sbjct: 179 EQRENGTFPG 188
>At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 164
Score = 90.2 bits (214), Expect = 4e-19
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Frame = +2
Query: 50 MPEMIKSAADIKTAPFDPRFPNQNQTRYCYQSYLDFHR------CQKVRGKKYDPCYYFQ 211
+ +K ++KTAP D RFP NQTR+C+ Y++FHR C +G+ + C F
Sbjct: 77 LARFLKPRIELKTAPADFRFPTTNQTRHCFTRYIEFHRYSCVIECTTAKGEDANECERFA 136
Query: 212 RVYKSMCPNEWVDKWDNQRAEGTFAG 289
+ Y+++CP EWVDKW+ QR GTF G
Sbjct: 137 KYYRALCPGEWVDKWNEQRETGTFPG 162
>At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family
contains similarity to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353; contains Pfam
profile PF02297: Cytochrome oxidase c subunit VIb
Length = 134
Score = 49.6 bits (113), Expect = 7e-07
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 89 APFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDK 253
A + RFP N+TR+C+ ++ +H+C + G+ + C + +S+CP E V K
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 502
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 196 VLLFPAGLQVHVSQRVGRQMG--QPARGGNLRRQDLNYSKAL 315
+ +FP+ L + VS RVG ++G QP + R L+ S L
Sbjct: 306 IYIFPSSLSISVSTRVGNELGANQPDKARIAARTGLSLSLGL 347
>At1g56710.1 68414.m06522 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
(Glycine max); contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 434
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 225 PCVPTSGSTNGTTSARREPSPAGFKLFQSTLV 320
PC P G NGTT SP +LFQS+ V
Sbjct: 161 PCKPHKG-LNGTTQTGPCDSPVAIRLFQSSKV 191
>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1123
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 53 PEMIKSAADIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYF 208
PE++++ D + A N + +C L+ RC K G++ P +Y+
Sbjct: 57 PELVEAIKDSRIAVI-VFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYY 107
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 8 WIEFEEKALFTLSKMPEMIKSAADIKTAPFDPRFPNQNQTRY 133
WI+ EK++ LS ++ +++ AP+ RFP ++ RY
Sbjct: 543 WIDSPEKSII-LSITSDIRTIRSEVFVAPYSLRFPRIDKVRY 583
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 115 PKPDEVLLSEL--FRLPSMPEGPRQEVRPVLLFP 210
PKP+ L EL F +P +PE P+ E+ + FP
Sbjct: 41 PKPEIPKLPELPKFEVPKLPEFPKPELPKLPEFP 74
>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to light
repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376
Length = 628
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = -1
Query: 281 RFPPRAGC--PICRPTRWDTW---TCRPAGNSS 198
R P R G C PT WD W +CRP S
Sbjct: 388 RVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGS 420
>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 505
Score = 26.6 bits (56), Expect = 5.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 196 VLLFPAGLQVHVSQRVGRQMG--QPARGGNLRRQDLNYSKAL 315
V +FP L + VS RVG ++G QP R L S AL
Sbjct: 314 VYIFPHSLSLGVSTRVGNELGSNQPKRARRAAIVGLGLSIAL 355
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 278 FPPRA--GCPICRPTRWDTWTCRPAGNSSTG 192
+PP A CP P W+++T P NS +G
Sbjct: 310 YPPPAYWSCPGVSPGAWNSFTWMPQPNSPSG 340
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 278 FPPRA--GCPICRPTRWDTWTCRPAGNSSTG 192
+PP A CP P W+++T P NS +G
Sbjct: 310 YPPPAYWSCPGVSPGAWNSFTWMPQPNSPSG 340
>At5g24020.1 68418.m02822 septum site-determining protein (MIND)
identical to MinD [Arabidopsis thaliana] GI:6759277;
contains Pfam PF00991 : ParA family ATPase
Length = 326
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 32 LFTLSKMPEMIKSAADIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGK 184
LF+ + ++ S+ KT PRF N R +S L F+R ++ G+
Sbjct: 6 LFSTNHQSLLLPSSLSQKTLISSPRFVNNPSRRSPIRSVLQFNRKPELAGE 56
>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
(ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
protein) {Arabidopsis thaliana}; contains Pfam profiles
PF02171: Piwi domain, PF02170: PAZ domain
Length = 988
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 254 ICRPTRWDTWTCRPAGNSSTGR 189
IC PT +D + C AG T R
Sbjct: 868 ICHPTEFDFYLCSHAGIQGTSR 889
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 317 KSALE*FKSCRRRFPPRAGCPICRPT 240
K A + +SC + PP GCP C T
Sbjct: 1007 KDARDLLRSCEK-CPPETGCPKCAQT 1031
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 254 ICRPTRWDTWTCRPAGNSSTGR 189
IC PT +D + C AG T R
Sbjct: 921 ICHPTEFDFYLCSHAGIQGTSR 942
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 254 ICRPTRWDTWTCRPAGNSSTGR 189
IC PT +D + C AG T R
Sbjct: 919 ICHPTEFDFYLCSHAGIQGTSR 940
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,144,661
Number of Sequences: 28952
Number of extensions: 166061
Number of successful extensions: 447
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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