Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P18
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.5  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.5  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    26   3.2  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   5.7  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   5.7  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   7.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.9  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   9.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 82   LNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFND 198
            L+ ++  YLK+G +EL   +  D   V D  F+ ++  D
Sbjct: 1255 LSTSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVSLLD 1293


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 304 VLVNALYFKGMWKSQFSPM 360
           ++V  LY+KG+W S + PM
Sbjct: 420 IVVPILYYKGVWFSNYLPM 438


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 441 FVRIFFVHHWYLYC-SLCIYVEGL 373
           F+RI  V  WY+ C +L IY+  L
Sbjct: 48  FIRILLVRGWYIVCYTLAIYLLNL 71


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 24  YSFLIHFNYIQFEVYTRY 77
           ++F+I FNYI+  +Y+R+
Sbjct: 431 HAFIIKFNYIKPSIYSRF 448


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 446 ETAPNSRRRFWKWLTRVTKQAWSSCCH 526
           E     +R F +W  R    A +SCCH
Sbjct: 161 ELVRRGQREFDRWCVRRFSPASNSCCH 187


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 335 IPLKYRALTRTTLE 294
           + LKYRA+TRTT++
Sbjct: 614 VTLKYRAVTRTTMD 627


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +1

Query: 19   DCIRSSFTSITSNLKSIQGITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFND 198
            DC ++   ++T  L +      N  + + +KE    L   L      +     E++NF +
Sbjct: 1298 DCFKNHIATVT--LATRANPYRNHPHNLSMKEFLCPLCKALCNTIFPILWRPKEEINFQE 1355

Query: 199  GAASAAAINKWVESKT 246
                 A +  W+ SKT
Sbjct: 1356 AGVLTAPLKNWLVSKT 1371


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -2

Query: 296  ESELMLSDDNRSLILSFVLLSTHLLIAAADAAPSLKFNFSKEASNTL--TASSFSSECSS 123
            ++EL L   N ++I  ++   T    A ++ A     + + E    L  T +SFS+ CS 
Sbjct: 1085 KNELDLVWQNINIIAEYIEGQTSTPSAVSEQATMAMLSQNTEELEDLLDTVTSFSAFCSD 1144

Query: 122  YGPSFKY 102
            Y     Y
Sbjct: 1145 YSKQIDY 1151


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +1

Query: 379 FHIDTQTTVEV--PMMYKEDTYKYGDSPELQAQILEMAYEGDQASMVVVLPHEIDGLN 546
           F  DT    EV    M KE++  +     L    +    E D  S++  LP EID  N
Sbjct: 17  FSFDTVPHDEVGSKFMQKEESKDWIADTPLDESAIVSEEESDDDSLLSDLPEEIDSTN 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,849
Number of Sequences: 5004
Number of extensions: 47457
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)