Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P17
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 29 0.94
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0) 27 3.8
SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0) 26 6.6
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 26 6.6
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 26 8.8
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42) 26 8.8
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 29.1 bits (62), Expect = 0.94
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 232 SQCGYENNIPMVCCPISNACKTPDDKPGICVG 327
S C + IP +C P ++AC T DD C+G
Sbjct: 528 STCPVMSRIPYMCNPTTHACDTDDD----CIG 555
>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 185 SEIKAEQLRIRNF*ETHNVV-MRIIYLWCAVPFQTLVRLQTINREFVSV 328
S+++A R R + TH ++ M +I+L+C PF + + E S+
Sbjct: 222 SQVQANTARYRKY--THTMIWMFVIFLFCYTPFMLTSAVASFGTETASI 268
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 182 KFSK-GSQSYRDTQFPDSFLGVVQVCARIKFTDINRIYETVEKIIILLLFI 33
+FSK G + Q PD LG V + + INR+Y + ++ + F+
Sbjct: 234 EFSKNGQNTIEAVQNPDMELGSVNSLSAVDIMQINRLYNCPQARLLGVCFV 284
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 148 VSLYDCEPLLNLFRNKSRTAEDKKLLGDSQC 240
+ L D P+L L+ +SRT L GDS C
Sbjct: 1151 IKLQDDVPILGLYSPESRTHGRIALYGDSNC 1181
>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 229
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 161 IVSLY*IYSEIKAEQLRIRNF*ETHNVVMRIIYLWCAVPFQ 283
I LY ++ ++ A Q+ I F ET + ++ W A PFQ
Sbjct: 5 IKRLYDVFLKVDATQVEINPFGETPDGKGKLFRSWKAQPFQ 45
>SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 121 TPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYEN 252
T G C SL E LL+L ++ ED+ + + C YEN
Sbjct: 3 TSEISKGKCTSL-KAESLLSLPNSQECGIEDENKVDRATCSYEN 45
>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
Length = 576
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 85 ISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENN 255
IS+N ++ + T SG + D + L+ F+N +T E + + D + +E N
Sbjct: 20 ISINNAKSDSKNTSNKGSGKSYQIVDTQKLIKRFKNLLQTNEIRDV--DLKSCFEEN 74
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 70 SYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYE 249
+Y+ L + + IR T NES C S Y+ +P +N ++S +D LL E
Sbjct: 737 AYMYLYTGSPIR--NAITVHNESLPCDSAYNYQPPVNEALSQSGQDQDLPLLDSIDGRVE 794
Query: 250 NNI 258
N++
Sbjct: 795 NSV 797
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 185 NKFSKGSQSYRDTQFPDSFLGVVQVCARIKFTDINRIYETVEKIIILLLFIKYNS 21
N F+K SY+ + + V A + + + +Y TV + I IK NS
Sbjct: 109 NPFTKPMPSYKSNRHDGTNSSTEIVGANMNLSSLTTVYPTVTRKIFTDQMIKQNS 163
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 106 AQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED-KKLLGDSQCGYENNIPMVCCPIS 282
+QTC + + NC++ Y C+P+ RN+ D GD + E + + +
Sbjct: 1591 SQTCAS--DAKANCIADYSCKPVFITRRNEILDPRDCNDKTGDKKSQTEAELGSLLRELK 1648
Query: 283 NACKTPDD 306
T D+
Sbjct: 1649 KPQNTSDE 1656
>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
Length = 603
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 13 YTRELYLINSNKMIIFSTVSYILLISVNLIRAQTCTTPRNESGNCVS 153
YTRE+ + N + I S++LL V AQ + NC+S
Sbjct: 111 YTREINISRDNVVDILEAASFLLLTPVKSACAQIILSAL-RINNCIS 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,148,058
Number of Sequences: 59808
Number of extensions: 179874
Number of successful extensions: 427
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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