Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P17
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family pr...    25   10.0 
AL110479-21|CAB54373.1|  462|Caenorhabditis elegans Hypothetical...    25   10.0 
AF059608-1|AAD13737.1|  526|Caenorhabditis elegans N2,N2-dimethy...    25   10.0 

>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 137 DSFLGVVQVCARIKFTDINRIYETVEKIIILL 42
           D F  ++ V  ++  T++NR+ E  EK+ +LL
Sbjct: 59  DQFNNIIDVDIKVARTELNRMGEEFEKLSLLL 90


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 250 NNIPMVCCPISNACKTPDD 306
           N +P+ C P+ N+  +PDD
Sbjct: 596 NGVPVECSPLINSSSSPDD 614


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 163 CEPLLNLFRNKSRTAEDKKLLGDSQC--GYENNIPMVCCPIS-NACKTPDDKPGICVG 327
           C+ L+ L   K+  +E ++   +  C  GYE N    CCP S NAC     +   C G
Sbjct: 424 CDGLVPL---KNPNSELQRCSEEDPCPAGYECNDSSYCCPSSENACNANMSRGNGCKG 478


>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 196 SRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDDKP 312
           ++T     + GD  C   NN+     PISN+  T D  P
Sbjct: 128 TQTGNGISVNGDCACYEANNVTGKSAPISNSYMTEDFSP 166


>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +1

Query: 67  VSYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGY 246
           + ++  ++V LI        R E+ N  S  + +  + +  N      D+K L  S C Y
Sbjct: 367 IVFLFFLNVILINKDELIPDREENNNHNSSMNTDDAIIM--NHQWNLNDQKSLWVSYCNY 424

Query: 247 ENNIPMVCC 273
           E   P+  C
Sbjct: 425 ETAGPLEWC 433


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 118  TTPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKT 297
            T P N     ++LY C+P+         T      L +S    +  +   CC  +N C  
Sbjct: 2000 TAPYNGGNQTLTLYTCDPV---------TVCTSLNLTNSCASIDGGLSGCCCS-TNNCVG 2049

Query: 298  PDDKPGI 318
            P++ PGI
Sbjct: 2050 PNNGPGI 2056


>Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical
           protein F33H2.1 protein.
          Length = 983

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 259 VYYSHNHIVSLLKVSYPQLFCFYF*INSV 173
           V +    IV  L +SYPQL C YF  N +
Sbjct: 330 VVFDMEKIVETLAISYPQL-CPYFSTNRI 357


>Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC376.5 protein.
          Length = 526

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 259 VYYSHNHIVSLLKVSYPQ 206
           +YY HN + +++KVS P+
Sbjct: 386 LYYEHNQMANVVKVSVPK 403


>U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family
           protein 6 protein.
          Length = 260

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 289 KRLKW---DSTP*VYYSHNHIVSLLKVSY 212
           K L+W   +S   +Y SH+H + LLK S+
Sbjct: 230 KALRWIAVNSNEPLYASHSHFIDLLKESH 258


>AL110479-21|CAB54373.1|  462|Caenorhabditis elegans Hypothetical
           protein Y105C5B.25 protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 137 DSFLGVVQVCAR--IKFTDINRIYETVEKIIILLLFIKYNSRV 15
           DS +G VQ+ +   +K  D    YE +E++   L+F KYN  V
Sbjct: 293 DSSVGEVQLQSTTIVKDQDYPDKYENIEQLEQELIFKKYNETV 335


>AF059608-1|AAD13737.1|  526|Caenorhabditis elegans
           N2,N2-dimethylguanosine tRNA methyltransferase protein.
          Length = 526

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 259 VYYSHNHIVSLLKVSYPQ 206
           +YY HN + +++KVS P+
Sbjct: 386 LYYEHNQMANVVKVSVPK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,293
Number of Sequences: 27780
Number of extensions: 142980
Number of successful extensions: 361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)