Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P17
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.56 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   0.97 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   9.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   9.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 0.56
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 277 ISNACKTPDDKP 312
           ++NACK  DDKP
Sbjct: 392 LTNACKKKDDKP 403


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 0.97
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 313 PVYRLESYKRLKW 275
           P YRLE  KRL W
Sbjct: 333 PKYRLELQKRLPW 345


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 259 VYYSHNHIVSLLKVSYPQLFCFY 191
           ++Y+ N IV  + +SY  +  FY
Sbjct: 236 LFYTVNLIVPCVSISYLSVLAFY 258


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 256 YYSHNHIVSLLKVSYPQLFCF 194
           YYS+  +++L+  S P   C+
Sbjct: 640 YYSYIGVLTLVATSMPTYICY 660


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 307 YRLESYKRLKWDSTP*VYYSHNHI 236
           Y   +YK+L  ++   +YY+ N+I
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 307 YRLESYKRLKWDSTP*VYYSHNHI 236
           Y   +YK+L  ++   +YY+ N+I
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINYI 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 139 GNCVSLYDCEPLLNLFRNKS 198
           G C  LYD  PL +   ++S
Sbjct: 176 GKCEVLYDIAPLSDFVIHRS 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,498
Number of Sequences: 438
Number of extensions: 1734
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)