Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P16
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   4.1  
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    27   7.1  
At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-...    27   7.1  
At3g52320.1 68416.m05750 F-box family protein contains F-box dom...    27   7.1  
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ...    27   7.1  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    27   9.4  
At3g19630.1 68416.m02488 radical SAM domain-containing protein s...    27   9.4  
At2g18000.1 68415.m02092 YEATS family protein contains Pfam doma...    27   9.4  

>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 206 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 298
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 469 IRPNNNTIIPFVSGRIVLD 413
           I PNNN ++PF+ G   +D
Sbjct: 304 IEPNNNIMVPFIYGGFFID 322


>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) identical to
           methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
           GI:2266985
          Length = 616

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 206 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 313
           YD F +TT    + + ++ Y  V +   I+R+D EG
Sbjct: 155 YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190


>At3g52320.1 68416.m05750 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 233 YMKDRVNQDLYIYVLSTLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQRIGVH--GS 406
           Y+ DR NQ  Y+ +L +    R D    ++  I +        G +++ A+ +  +  G 
Sbjct: 79  YLVDRENQSKYL-LLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTGR 137

Query: 407 RMIEYYPSTYKWDNSVVIRSNTTVWHY 487
           R+    PST +     ++RS T VW++
Sbjct: 138 RVKVCNPSTRQIVELPIMRSKTNVWNW 164


>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
           identical to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
           dehydrogenase [Amaranthus hypochondriacus] GI:2388710
          Length = 501

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 350 YFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVI 460
           ++ NG+I     R+ VH S   E+     KW  ++ I
Sbjct: 287 FWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKI 323


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 11  SITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPF 136
           S+  S  W++EN +N  + +   +I I +KK   L  + +P+
Sbjct: 472 SMVRSFDWALENGLNAEEMDMGERIGITLKKAVPLEAIPIPY 513


>At3g19630.1 68416.m02488 radical SAM domain-containing protein
           similar to florfenicol resistance protein
           [Staphylococcus sciuri] GI:9909980; contains Pfam
           profile PF04055: radical SAM domain protein
          Length = 372

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 128 VPFSPLNPTHQFEAVIMFNVLYSAKDYDTFYKTTVYMKDRVNQDL 262
           +PF+P+  T QFE   +  V    K     YK    ++  + QD+
Sbjct: 297 IPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDI 341


>At2g18000.1 68415.m02092 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 202

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 IMFNVLYSAKDYDTFYKTTVYMKDRVNQDLYIYVLSTL-HIHRS 301
           I F +   A +Y T +K TVY++   N+DL + +   + H+H S
Sbjct: 49  IAFYLGKKATEYRT-HKWTVYVRGATNEDLGVVIKRVIFHLHPS 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,962,656
Number of Sequences: 28952
Number of extensions: 229100
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)