Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P15
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   230   8e-62
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   230   8e-62
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   1e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    32   0.044
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   0.94 
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   1.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   2.2  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   2.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   3.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   3.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   3.8  
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.8  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   8.8  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    24   8.8  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  230 bits (562), Expect = 8e-62
 Identities = 101/136 (74%), Positives = 124/136 (91%)
 Frame = +3

Query: 24  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122

Query: 384 ECADLWPRIASNASSI 431
           ECADLWPRIASNA ++
Sbjct: 123 ECADLWPRIASNAGTV 138


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  230 bits (562), Expect = 8e-62
 Identities = 101/136 (74%), Positives = 124/136 (91%)
 Frame = +3

Query: 24  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122

Query: 384 ECADLWPRIASNASSI 431
           ECADLWPRIASNA ++
Sbjct: 123 ECADLWPRIASNAGTV 138


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = +3

Query: 177 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 329
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 330 VNNKGEMKGSAITGPVAKE 386
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 31.9 bits (69), Expect = 0.044
 Identities = 24/88 (27%), Positives = 39/88 (44%)
 Frame = -2

Query: 328  MTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPL 149
            +  ALSS+Y    S L        +T  +T  LSS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 148  IPCTAITYRFFAPVLSAQLITAPTGRPS 65
             P +A      A  +++ LI +P   P+
Sbjct: 837  TPLSA-ALGSAAQSITSPLIMSPAAIPA 863


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 406 RGHKSAHSLATGPVIAEPFISPLLF-TMTPALSSKYMNTPSRLLNGF 269
           R HK AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -2

Query: 289 SRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 122
           + LLN F  L+    +T + S  + +     ++  EP    ++      C ++TYR
Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 317 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 231
           ++ EI+ HP    + FPLP       LFP
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 210 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 320
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 155 SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 256
           SS ++T CWFW         R     E G A+ G
Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 195 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 326
           IV    KGK  L   + P++ I       R  G  +Y ED  GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 358 EPFISPLLFTMTPALSSKYMNTPS 287
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -2

Query: 400  HKSAHSLATGPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLITTA 248
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 246 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 365
           P+  I  +KP    D V +  +D+   + N+K ++   A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -1

Query: 395  VSALLSDGSCDSRAFHLPLVVHDDPRIILEIYEHPVPPSKWFPLPDHHCWHYLFPE 228
            +SA   +G+ D+ +  +P  V D+       +++   P+ W  + D+H   +L P+
Sbjct: 1628 ISASFDEGALDN-SDSIPANVLDEEEKECFSFKNVDGPANWVDIDDYHEADWLLPQ 1682


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 288 DGVFIYFEDNAGVIVNNKGEMKGSAI 365
           DG  +  E N  ++VN   +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +3

Query: 6   HNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 185
           +NK+ K+    +      ++ G    AVI      G KN+  ++V   +  L R      
Sbjct: 96  YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155

Query: 186 GDMIVATVKK 215
            + ++  V K
Sbjct: 156 VEFVIGAVDK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,164
Number of Sequences: 5004
Number of extensions: 42138
Number of successful extensions: 128
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)