Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P09
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    28   0.50 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   0.50 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   1.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   4.7  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   4.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   4.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.1  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   6.1  

>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 334 HRTFPTVQAKTSMVLDSYLPILLASQL 254
           HR F TV A+T  VLD  +P L+ ++L
Sbjct: 30  HRQFSTVPARTIDVLDITVPTLVGAEL 56


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 412 RTIFDYRKVVLVVCRMY*WSIF 347
           R  FDYRK + +V  ++ WS+F
Sbjct: 428 RDYFDYRKHICIVTDLFGWSVF 449


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 257 LGSQEDWQIGIENHTCLRLHCRKRSVDGIQKYRPSIHTAYHQHDLSVIKDGA 412
           L S  D Q  ++  T   LH RK+SVDG  ++  S+   Y    L V++ GA
Sbjct: 581 LPSSNDEQTPVKE-TIPFLHIRKKSVDGNWEFNKSLTGTY----LDVLESGA 627


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 165 RDRSSLQLLNEYYFNG 118
           R+R+SL  L+EYY NG
Sbjct: 374 RNRNSLSNLDEYYVNG 389


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 ESRTILVFACTVGNVRWMEFRNIDHQYIRHTTNTTF 392
           +S  + V     G+VR  + R++DH  I +  ++TF
Sbjct: 220 DSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTF 255


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 177  QTYSRDRSSLQLLNEYYFNGFLYVYIYV--YLNIDY 76
            QT    R++L+L +   F G LY+ +Y+  Y+N DY
Sbjct: 1173 QTKLIGRAALELRDSKVFKGLLYLILYLGNYMN-DY 1207


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = -1

Query: 312 KRRQVWFSIPICQSSWLPS**ATTPVADYKQQHSKYQ---LPRCHD----PSQTYSRDRS 154
           +RR   +++P+ ++S  PS  A +P    KQ+H  Y    LP+  +    P+  +SR  S
Sbjct: 176 ERRFTEWNVPLRETSPSPSETADSPNKLPKQKHPAYSFVTLPKREEILKRPASLHSRVES 235

Query: 153 SLQLLNE 133
           +   +N+
Sbjct: 236 TNSFINQ 242


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 284 GIENHTCLRLHCRKRSVDGIQK 349
           G+EN  CL + C +  ++G +K
Sbjct: 226 GLENCECLCVSCERMGINGFKK 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,263
Number of Sequences: 5004
Number of extensions: 35953
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)