Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P09
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    29   1.1  
11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851...    27   5.9  
07_01_0570 + 4228567-4228852,4229198-4229217                           27   5.9  
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519...    27   5.9  
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326...    27   7.8  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    27   7.8  
03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097     27   7.8  

>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 341 FHPPNVSYSASEDKYGSRFLSANPLGFPVD 252
           +H P  SYS S+DK G   LS   + F V+
Sbjct: 322 YHTPKSSYSYSDDKLGGNVLSVGDIPFFVN 351


>11_04_0218 +
           14983132-14984658,14984762-14984869,14984964-14985125,
           14985270-14985275
          Length = 600

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 409 TIFDYRKVVLVVCRMY*W 356
           ++FDYR+ V+ + RMY W
Sbjct: 528 SVFDYREAVVPLARMYQW 545


>07_01_0570 + 4228567-4228852,4229198-4229217
          Length = 101

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 353 YISEFHPPNVSYSASEDKYGSRFLSANPLGF 261
           Y   +H P + Y+   + YGS    A+P GF
Sbjct: 68  YFGAYHEPTIGYAPHSEYYGSMVSHAHP-GF 97


>02_03_0118 -
           15451031-15451123,15451744-15451831,15451914-15451985,
           15452896-15453018,15453541-15453629
          Length = 154

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 78  NQYLGKHIYKHKGNH*NNIRLKVVRNYDLWSRFVMDHDIVEVDILNVVVCNLPQ 239
           + Y   H++   G H + + +++V   +   +   +H+I+   IL++ +  LPQ
Sbjct: 99  SMYTWSHLFWCLGPHLSLVEVELVHKIEKLHKKFTNHEIINDQILHLDIHKLPQ 152


>05_01_0414 +
           3262886-3262957,3264517-3264597,3265115-3265214,
           3265473-3265522,3265581-3265671,3266636-3266715,
           3266940-3267005,3267761-3267860,3267934-3268011,
           3268165-3268232,3268305-3268373,3268485-3268562,
           3269561-3269631,3270632-3270709,3270808-3270913,
           3271475-3271579,3272256-3272387,3272464-3272571,
           3272655-3272764,3272868-3272963,3273155-3273617
          Length = 733

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 185 IHHKPTPEIVVPYNF*TNIISMVSFMFIY 99
           I+ K    + VPYN   N++S++  +F+Y
Sbjct: 79  IYRKQEGRVCVPYNEIYNLMSLMHLLFLY 107


>04_01_0422 +
           5573833-5574647,5575577-5575692,5576922-5577130,
           5579676-5579795,5581616-5581744,5581828-5581953,
           5582945-5583000,5583084-5583183,5585155-5585272,
           5585374-5585583,5585902-5586226,5587094-5587187,
           5588021-5588129,5588246-5588514,5589153-5589280,
           5589983-5590217,5590858-5591046,5591326-5591609,
           5591698-5591890,5592040-5592207,5592429-5592514,
           5594391-5594550
          Length = 1412

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 246 TTPVADYKQQHSKYQLPRCHDP 181
           T P   YK   SKY++P C+ P
Sbjct: 846 TEPSCPYKCISSKYKMPNCYTP 867


>03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097
          Length = 215

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 240 PVADYKQQHSKYQLPRCHDPSQTYSRDRSSLQL 142
           PV +Y  +   + L RC  P Q +SR  +SL +
Sbjct: 31  PVENYTMEGGIHPLLRCPAPQQIWSRPANSLPI 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,592
Number of Sequences: 37544
Number of extensions: 225688
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)