Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P08
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 99 3e-22
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 30 0.15
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 28 0.62
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 1.1
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 1.4
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 1.4
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 1.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 2.5
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 3.3
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 3.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.3
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 25 4.4
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 5.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 7.6
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 99.1 bits (236), Expect = 3e-22
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 24/177 (13%)
Frame = +2
Query: 2 NFEIFHMREKEIPVDSVEIKEPIQAFAWEPVGSKFAIIHG-----DPANI--SISFY--Q 154
N EIF +REK IPV+ V++K+ + FAWEP +FAII + N+ ++SFY +
Sbjct: 437 NLEIFRIREKNIPVEVVDLKDVVLNFAWEPKSDRFAIISANDQVLNSTNVKTNLSFYGFE 496
Query: 155 VNTGQAPTLRK--KFERKPFNHLFWSPSGQFIVLANLG-LTGGALEFLDTNDFT------ 307
T R F++K N LF +P G+F+V A LG T LEF D + T
Sbjct: 497 QKKNTPSTFRHIITFDKKTCNSLFMAPKGRFMVAATLGSSTQYDLEFYDLDFDTEKKEPD 556
Query: 308 -IMNV-----CDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVM 460
+ NV +H+ M+ +EWDP+GRYV T + + K++ GY + F+G ++R M
Sbjct: 557 ALANVQQIGSAEHFGMTELEWDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLREEM 613
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 30.3 bits (65), Expect = 0.15
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 191 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHY--QMSGIEWDPTG 364
F + P N +SP Q++ L + G L+ D +++V Y ++ + W P G
Sbjct: 320 FSKSPINGFCFSPDYQYLALVS---ERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDG 376
Query: 365 RYVVTG 382
+++ G
Sbjct: 377 KFIAIG 382
Score = 27.9 bits (59), Expect = 0.82
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 199 PLELLAQSRRLPGVHLVEADRDVRRVTVDY-SELRPDRFPSESLYGFLNLDR 47
P E + + +++ GVH VE +RDV + +Y + R S S +L L R
Sbjct: 72 PREYIEELKKIHGVHHVEENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHR 123
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 28.3 bits (60), Expect = 0.62
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 200 KPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVC-DHYQMSGIEW 352
KP +H S + + GL GAL+F+ + + VC +H + +G+ +
Sbjct: 215 KPSDHAVLSSYIVYQIFREAGLPAGALQFIPGDAVEVSKVCFNHPEFAGLHF 266
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 197 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLD--TNDFTIMNVCDHYQMSGIEWDPTGRY 370
R N + W+P G+ ++ G + G + T +F ++N Y + EW GR+
Sbjct: 81 RHVINVVRWTPDGRRLLT---GSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGRW 137
Query: 371 VVTG 382
+++G
Sbjct: 138 LISG 141
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 140 ISFYQVNTGQAPTLRKKFERKPFNHLFWSPSGQFIVLA 253
I FY +TG L +K + KP ++W+ G+F++LA
Sbjct: 447 ICFYDWDTG---ILVRKIDVKP-KGVYWNDDGRFVILA 480
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 215 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNV-CDH-YQMSGIEWDPTGRYVVT 379
L WS F++ G +L D + ++ DH + + G+ WDP +Y+V+
Sbjct: 134 LCWSVDSNFLIA---GAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVS 187
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 221 WSPSGQFIVLANLGLTGG-ALEFLDTNDFT-IMNVCDHYQ-MSGIEWDPTGRYVVT 379
W+P+G +V G TGG L D + + ++ H + + G+ WDP G++ ++
Sbjct: 334 WNPNGNCVVC--WGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLS 387
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 215 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHYQ-MSGIEWDPTGRYVVT 379
L WS Q +V ++GL + + T + + H + GI +DP G+Y T
Sbjct: 140 LCWSYDSQLVV--SVGLDSSIIVWNGTTFERLKRIEAHQSHVKGITFDPAGKYFAT 193
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 2 NFEIFHMREKEIPVDSVEIKEPIQAFAWEPVGSKFAIIHGDPANISISF-YQVNTGQ 169
+FE + +E+E+ V V+ K+P EP+ +K + +++ + Y+V GQ
Sbjct: 33 SFETCNTKERELMVQQVDSKKPETPTDLEPLANKLEGPLSERVHLNTTLDYEVLRGQ 89
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 414 PQSILHLREDTPVTT*RPVGSHSMPDIW*WSQTFIIVKSL 295
P S+ +L +D P + +S+P W W +T+ +SL
Sbjct: 1346 PNSLSNLDQDLPNHLQHLIPIYSLPQDWLWCETWCSDESL 1385
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 373 GDWSVLSQVQDGLRLLHLVLPG 438
GD SV+ Q DG+ VLPG
Sbjct: 160 GDLSVVDQTGDGIAFCQTVLPG 181
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 4.4
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 220 EQMVERLPLEL--LAQSRRLPGVHLVEADRDVRRVTVDYSELRPDRFPSESLYGFLNLDR 47
EQ+ RL LEL L + R+ +A + V D S+LR DR + +
Sbjct: 307 EQVSIRL-LELIDLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRK----KIQL 361
Query: 46 INGYLLLSHMENF 8
N Y+ LSH +NF
Sbjct: 362 RNEYIKLSHQQNF 374
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 217 VLVTLGA-VHSARQLGSHRWSFGVF 288
V+ TLGA V S + G+ RW FG+F
Sbjct: 310 VVSTLGASVISDKLAGNPRWPFGLF 334
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 231 EGDQNRWLNGFLSNFLRR 178
EG + WL F NF RR
Sbjct: 755 EGRDSEWLGAFAQNFYRR 772
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,543
Number of Sequences: 5004
Number of extensions: 44500
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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